Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3473
(383 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47740.2 68414.m05309 expressed protein 40 4e-04
At1g47740.1 68414.m05308 expressed protein 40 4e-04
At5g25170.1 68418.m02984 expressed protein 36 0.009
At1g80690.1 68414.m09468 expressed protein 35 0.021
At2g25190.1 68415.m03012 expressed protein 33 0.065
At4g17486.1 68417.m02616 expressed protein 33 0.086
At5g47310.1 68418.m05832 expressed protein 30 0.46
At4g31980.1 68417.m04547 expressed protein contains Pfam profile... 30 0.61
At5g39970.1 68418.m04847 expressed protein low similarity to up-... 29 1.1
At3g23590.1 68416.m02967 expressed protein 28 1.9
At2g35460.1 68415.m04344 harpin-induced family protein / HIN1 fa... 28 1.9
At2g20110.2 68415.m02350 tesmin/TSO1-like CXC domain-containing ... 28 1.9
At2g20110.1 68415.m02349 tesmin/TSO1-like CXC domain-containing ... 28 1.9
At2g18770.1 68415.m02185 expressed protein 27 4.3
At5g66820.1 68418.m08425 expressed protein 26 7.5
At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein ... 26 7.5
At4g33890.2 68417.m04809 expressed protein 26 9.9
At4g33890.1 68417.m04808 expressed protein 26 9.9
At4g21550.1 68417.m03113 transcriptional factor B3 family protei... 26 9.9
At3g58610.1 68416.m06532 ketol-acid reductoisomerase identical t... 26 9.9
>At1g47740.2 68414.m05309 expressed protein
Length = 279
Score = 40.3 bits (90), Expect = 4e-04
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 277 SQHPRPGQATVVLNVYDMYWTNWYTAGAGLGVFHS 381
S + PG+A V LNVYD+ N Y AGLG+FHS
Sbjct: 61 SNNHGPGRAPVYLNVYDLTPINGYIYWAGLGIFHS 95
>At1g47740.1 68414.m05308 expressed protein
Length = 279
Score = 40.3 bits (90), Expect = 4e-04
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1
Query: 277 SQHPRPGQATVVLNVYDMYWTNWYTAGAGLGVFHS 381
S + PG+A V LNVYD+ N Y AGLG+FHS
Sbjct: 61 SNNHGPGRAPVYLNVYDLTPINGYIYWAGLGIFHS 95
>At5g25170.1 68418.m02984 expressed protein
Length = 218
Score = 35.9 bits (79), Expect = 0.009
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 289 RPGQATVVLNVYDMYWTNWYTAGAGLGVFHS 381
+PG V LNVYD+ N Y GLG++HS
Sbjct: 14 KPGSVPVYLNVYDLTPINGYAYWLGLGIYHS 44
>At1g80690.1 68414.m09468 expressed protein
Length = 227
Score = 34.7 bits (76), Expect = 0.021
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +1
Query: 256 LLSRRSDSQHPRPGQATVVLNVYDMYWTNWYTAGAGLGVFHS 381
+L R++ S R G V LNVYD+ N Y GLGV+HS
Sbjct: 1 MLCRKNSSLVDR-GNVPVYLNVYDLTPINGYAYWLGLGVYHS 41
>At2g25190.1 68415.m03012 expressed protein
Length = 240
Score = 33.1 bits (72), Expect = 0.065
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +1
Query: 256 LLSRRSDSQHPRPGQATVVLNVYDMYWTNWYTAGAGLGVFHS 381
L + S + + G V LNVYD+ N Y GLGVFHS
Sbjct: 2 LCFKGSVKRKKQSGSVPVYLNVYDLTPMNAYGYWLGLGVFHS 43
>At4g17486.1 68417.m02616 expressed protein
Length = 224
Score = 32.7 bits (71), Expect = 0.086
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 235 MFPSCMSLLSRRSDSQHPRPGQAT---VVLNVYDMYWTNWYTAGAGLGVFHS 381
M+ +S S SD + G+A V LNVYD+ N Y G+G+FHS
Sbjct: 1 MWVPTLSSSSCSSDERDESSGEAALTPVYLNVYDLTPVNNYLYWFGIGIFHS 52
>At5g47310.1 68418.m05832 expressed protein
Length = 245
Score = 30.3 bits (65), Expect = 0.46
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 307 VVLNVYDMYWTNWYTAGAGLGVFHS 381
V LNVYD+ N Y GLG+FHS
Sbjct: 30 VYLNVYDLTPVNNYLYWFGLGIFHS 54
>At4g31980.1 68417.m04547 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 680
Score = 29.9 bits (64), Expect = 0.61
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 295 GQATVVLNVYDMYWTNWYTAGAGLGVFHS 381
G V LNVYD+ N Y G+G++HS
Sbjct: 15 GTVPVYLNVYDLTPMNVYGYWLGIGIYHS 43
>At5g39970.1 68418.m04847 expressed protein low similarity to
up-regulated by thyroid hormone in tadpoles; expressed
specifically in the tail and only at metamorphosis;
membrane bound or extracellular protein; C-terminal
basic region [Xenopus laevis] GI:1234787
Length = 690
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 215 YRAVFAPCSRLACRCYRAVQTPSTLGPDRRPWSSTFTICIGRIGTL 352
YR V C +P + PDR P SS+F+ + IGTL
Sbjct: 631 YRIVGPSRCNFHCSLENTTSSPPSKQPDRSPPSSSFSKKLHNIGTL 676
>At3g23590.1 68416.m02967 expressed protein
Length = 1309
Score = 28.3 bits (60), Expect = 1.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 283 AGSLNGAIAATCKTGTWRKY 224
A +L+G I+ C+T TWR Y
Sbjct: 1226 ASALDGKISVGCETATWRTY 1245
>At2g35460.1 68415.m04344 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein
similar to harpin-induced protein hin1 ( GI:1619321)
[Nicotiana tabacum];
Length = 238
Score = 28.3 bits (60), Expect = 1.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 175 IRNLLTHQRSQITVSCGICAMFPSCM 252
++ +H R V CGIC F SC+
Sbjct: 18 VKTYYSHGRRGSDVGCGICGCFSSCL 43
>At2g20110.2 68415.m02350 tesmin/TSO1-like CXC domain-containing
protein similar to SP|Q9WTJ6 Tesmin
(Metallothionein-like 5, testis-specific) {Mus
musculus}; contains Pfam profile PF03638:
Tesmin/TSO1-like CXC domain
Length = 578
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 234 HVPVLHVAAIAPFRLPAPSARTGDRGPQR 320
HVP+ H +P +P P+ T D PQ+
Sbjct: 89 HVPIRHPRPESPNSMPRPAGETRDGTPQK 117
>At2g20110.1 68415.m02349 tesmin/TSO1-like CXC domain-containing
protein similar to SP|Q9WTJ6 Tesmin
(Metallothionein-like 5, testis-specific) {Mus
musculus}; contains Pfam profile PF03638:
Tesmin/TSO1-like CXC domain
Length = 571
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 234 HVPVLHVAAIAPFRLPAPSARTGDRGPQR 320
HVP+ H +P +P P+ T D PQ+
Sbjct: 89 HVPIRHPRPESPNSMPRPAGETRDGTPQK 117
>At2g18770.1 68415.m02185 expressed protein
Length = 260
Score = 27.1 bits (57), Expect = 4.3
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -3
Query: 378 VEHTQTRARSVPIRPIHIVNVEDHGRL 298
V H + + ++P+H+++V H RL
Sbjct: 96 VLHNENNTKKGKVKPVHLIDVPGHSRL 122
>At5g66820.1 68418.m08425 expressed protein
Length = 519
Score = 26.2 bits (55), Expect = 7.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 355 PQCTNSSNTYRKR*GPRSPVRAE 287
P+CT+ S++Y PRSP+ E
Sbjct: 372 PECTDVSSSYSGNSTPRSPISPE 394
>At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 427
Score = 26.2 bits (55), Expect = 7.5
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 193 HQRSQITVSCGICAMFPSCMSLLSRRSDSQHPRPGQATVVLNVYDMY 333
H ++ T SC +C+ LLS H QA V YDMY
Sbjct: 164 HYNARHTASCSVCSRVYPTSRLLSIHISEAHDSFFQAKVSRG-YDMY 209
>At4g33890.2 68417.m04809 expressed protein
Length = 342
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 221 AVFAPCSRLACRCYRAVQTPSTLGPDRRPWSSTFT 325
+ F+P +R CR + PS LGP +P S T T
Sbjct: 111 SAFSPSTR-KCRSRKLRDRPSPLGPLGKPHSLTTT 144
>At4g33890.1 68417.m04808 expressed protein
Length = 342
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 221 AVFAPCSRLACRCYRAVQTPSTLGPDRRPWSSTFT 325
+ F+P +R CR + PS LGP +P S T T
Sbjct: 111 SAFSPSTR-KCRSRKLRDRPSPLGPLGKPHSLTTT 144
>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
low similarity to SP|Q01593 Abscisic acid-insensitive
protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
protein homolog {Oryza sativa}; contains Pfam profile
PF02362: B3 DNA binding domain
Length = 721
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 152 IVTRPVNVYG-ICLHIKEAK*PYRAVFAPCSRLACRCYRAVQTPSTLGP 295
I+ +P +V G C ++ P R C C +Q+PS +GP
Sbjct: 533 IIGKPTDVAGSTCTEVEGLLISPTTTKHPRHRDGCTCIICIQSPSGIGP 581
>At3g58610.1 68416.m06532 ketol-acid reductoisomerase identical to
ketol-acid reductoisomerase, chloroplast precursor (EC
1.1.1.86) (Acetohydroxy-acid reductoisomerase)
(Alpha-keto-beta-hydroxylacil reductoisomerase)
(Swiss-Prot:Q05758) [Arabidopsis thaliana]
Length = 591
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 197 KEAK*PYRAVFAPCSRLACRCYRAVQTPSTL 289
K+ + Y A F PC + CY VQ+ S +
Sbjct: 376 KDFETAYSASFYPCMEILYECYEDVQSGSEI 406
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,751,117
Number of Sequences: 28952
Number of extensions: 176775
Number of successful extensions: 419
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -