Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3470
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   4.9  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    25   6.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.6  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   8.6  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 121 ETNVATIFFATLRERTIFVGFNSFSNTQTRDWFLFRVRT 237
           E  + T  +A+LR +T++   N FSN       L+R  T
Sbjct: 815 EYTLRTRIWASLRTQTLYRTINGFSNYSRAIKLLYRTET 853


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 175 QKLFVHGVLQKKWWPRLS 122
           ++LF+H +  ++WW +LS
Sbjct: 448 RQLFLHKLTSREWWEKLS 465


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = -3

Query: 236  VRTRNKNQSRVWVFENELKPTKIVRS 159
            + + NKNQSR++ F   ++ +K++++
Sbjct: 2110 ITSLNKNQSRIFCFREPIRISKLLQN 2135


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 485 LNQLTHSINVFLGDCSFWTTLTG 553
           + Q +H+ ++F   C F+ TLTG
Sbjct: 854 IRQASHATDIFALGCIFYYTLTG 876


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,319
Number of Sequences: 5004
Number of extensions: 58919
Number of successful extensions: 212
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)