Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3470
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0185 + 13206920-13207650,13208671-13208734,13208927-13208938     31   0.94 
10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381...    29   2.2  
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540...    29   2.9  
10_03_0033 - 7248131-7248711,7248947-7249079,7249470-7249994,725...    29   3.8  
01_03_0138 + 12963464-12965059,12965085-12965660                       29   3.8  
01_03_0012 + 11638363-11638476,11638854-11640678,11641855-116420...    29   3.8  
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588...    28   5.0  
01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101...    27   8.7  

>09_03_0185 + 13206920-13207650,13208671-13208734,13208927-13208938
          Length = 268

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = -1

Query: 535 KTAVSQENVDAVRKLIEEDRHVAYREIQATLDIGMSQIQIILHEQLGVKKLFSRWIPHSL 356
           K  + QE ++ + K +E+       ++QA +D+ +  +  +L EQ+ V +   R +P +L
Sbjct: 21  KVGLIQEKLEVMDKKLEKQGE-RLDQVQAKVDLSLESLGQVLQEQIHVMQAVKRTVPATL 79


>10_01_0345 -
           3811057-3811236,3811342-3811615,3811732-3812289,
           3812602-3812747,3812930-3813097,3813896-3814003,
           3814859-3815029,3816557-3816949,3817522-3817617,
           3817715-3817774,3818600-3818744,3819296-3819520,
           3820106-3820254
          Length = 890

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 397 LIVHARLFVFDSCQCLKLPEFRGMPHVDLPQSAYAQHQR 513
           L+VH + F +      KL  F   P  DL  S YA H R
Sbjct: 764 LVVHLKRFSYSRFMKNKLDTFVNFPIHDLDMSRYANHSR 802


>08_02_1556 -
           27852247-27852738,27853005-27853197,27854006-27854070,
           27854161-27854199,27854572-27854592,27854819-27855052,
           27855420-27855504,27855953-27856026,27856516-27856647,
           27856735-27856834,27857296-27857361,27857472-27857509,
           27858013-27858219,27858378-27858427,27858871-27858940,
           27859065-27859133,27859456-27859530,27860456-27860530,
           27860887-27860934
          Length = 710

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 388 KLFSRWIPHSLCEEQKAARVTWCVRTLERFHAG 290
           +LF +W PHS  E +K  R  W  R LE F  G
Sbjct: 175 RLFRKWFPHSGSEFEKDLRNEWW-RGLELFWQG 206


>10_03_0033 -
           7248131-7248711,7248947-7249079,7249470-7249994,
           7250545-7250764,7250913-7251145
          Length = 563

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -2

Query: 363 IRSVKSKRRLALLGASELSKDSTQDPQMLYTTLY-QVTNPEYT 238
           +R+V SK +  L    +L+KD  +    L+TT++ ++ +P+YT
Sbjct: 387 LRTVHSKFKAVLTALLKLAKDIIRPKDPLFTTVHKKLLSPQYT 429


>01_03_0138 + 12963464-12965059,12965085-12965660
          Length = 723

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 425 LTHANV*SCLNFAVCHMSIFLNQLTHSINVFLGDCSFWT 541
           +THA          CH+S +   L  ++   L DC  WT
Sbjct: 554 ITHARTSPDNKIVACHLSYYCAYLVAAVPELLPDCPAWT 592


>01_03_0012 +
           11638363-11638476,11638854-11640678,11641855-11642096,
           11642198-11642327,11642464-11642774
          Length = 873

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = -2

Query: 168 CSFTECC---KKNGGHVCLQNRPCYD 100
           C +  CC   + N GHVC  NR  YD
Sbjct: 457 CVYESCCDLSQGNDGHVCFCNRNLYD 482


>01_03_0271 +
           14454681-14456949,14457222-14457476,14458800-14458864,
           14459053-14459171,14459270-14459324
          Length = 920

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 4   LQFSLRSSKTTCGKQMLAYHSALTVLCFSRGIVVTWPVL 120
           L+ S+ +  T CG    AY SA TVL  S+G V +W  L
Sbjct: 287 LETSIVNFYTRCG----AYQSAATVLQNSKGTVASWNAL 321


>01_06_1516 -
           37908284-37908497,37909666-37909733,37909809-37910186,
           37910315-37910393,37910433-37910749
          Length = 351

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +1

Query: 367 VSIGKTTFLHLIVHARLFVFDSCQCLKLPEFR----GMPHVDLPQSAYAQHQRFL 519
           +S+GKTTFL  I +  + + D  + +  P  +    G  H ++  + YA+ QR +
Sbjct: 54  ISVGKTTFLQRIANETIELRDLVEIVPEPIAKWQDVGPDHFNILDAFYAEPQRVM 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,863,544
Number of Sequences: 37544
Number of extensions: 360071
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)