Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3470
(607 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical ... 57 8e-09
AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical... 56 1e-08
AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical ... 56 2e-08
U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical pr... 55 5e-08
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 34 0.091
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 34 0.091
U21310-1|AAA62519.1| 997|Caenorhabditis elegans Hypothetical pr... 29 2.6
U41540-10|AAK39228.1| 372|Caenorhabditis elegans Hypothetical p... 28 4.5
>AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical
protein Y49F6A.4 protein.
Length = 514
Score = 57.2 bits (132), Expect = 8e-09
Identities = 39/116 (33%), Positives = 56/116 (48%)
Frame = -1
Query: 598 WFAEFQRGRVKLSDDPRQGRPKTAVSQENVDAVRKLIEEDRHVAYREIQATLDIGMSQIQ 419
WF +F+ G L + R GRP V D V KL+EE+ ++ RE++ L+ S I
Sbjct: 24 WFQKFKNGDFSLEEIERSGRP---VELNEEDLV-KLVEEEPRLSLREMEEKLECCHSTIA 79
Query: 418 IILHEQLGVKKLFSRWIPHSLCEEQKAARVTWCVRTLERFHAGSSNAVYNIVSGDE 251
L +LG W+PH L QK RV C + L + + N+V+GDE
Sbjct: 80 RHLG-RLGFTSKLGTWVPHELSASQKLTRVNVCTQLLT--FRRKFDWLNNLVTGDE 132
>AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical
protein Y45G12C.13 protein.
Length = 384
Score = 56.4 bits (130), Expect = 1e-08
Identities = 39/116 (33%), Positives = 56/116 (48%)
Frame = -1
Query: 598 WFAEFQRGRVKLSDDPRQGRPKTAVSQENVDAVRKLIEEDRHVAYREIQATLDIGMSQIQ 419
WF +F+ G L + R GRP V D V KL+EE+ ++ RE++ L+ S I
Sbjct: 49 WFQKFKNGDFSLEEIERSGRP---VELNEEDLV-KLVEEEPRLSLREMEEKLECCHSTIA 104
Query: 418 IILHEQLGVKKLFSRWIPHSLCEEQKAARVTWCVRTLERFHAGSSNAVYNIVSGDE 251
L +LG W+PH L QK RV C + L + + N+V+GDE
Sbjct: 105 RHLG-RLGFTSKLGIWVPHELSASQKLTRVNVCTQLLT--FRRKFDWLNNLVTGDE 157
>AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical
protein Y39A3A.1 protein.
Length = 311
Score = 56.0 bits (129), Expect = 2e-08
Identities = 37/116 (31%), Positives = 59/116 (50%)
Frame = -1
Query: 598 WFAEFQRGRVKLSDDPRQGRPKTAVSQENVDAVRKLIEEDRHVAYREIQATLDIGMSQIQ 419
WF + ++ L D PR GRP+ + ++ + + +E+D REI ATL + I
Sbjct: 18 WFEKIKKKNYDLDDKPRSGRPRLDIDED----ISRALEDDPRSMSREISATLKRPHTTII 73
Query: 418 IILHEQLGVKKLFSRWIPHSLCEEQKAARVTWCVRTLERFHAGSSNAVYNIVSGDE 251
LHE V K F + +PH+L + QK R + L R +++ V +I +GDE
Sbjct: 74 NHLHESGRVPK-FGQLVPHNLSDSQKNLRCDLSLSLLTR--KRTTDWVKDITTGDE 126
>U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical
protein R05G6.2 protein.
Length = 339
Score = 54.8 bits (126), Expect = 5e-08
Identities = 38/116 (32%), Positives = 55/116 (47%)
Frame = -1
Query: 598 WFAEFQRGRVKLSDDPRQGRPKTAVSQENVDAVRKLIEEDRHVAYREIQATLDIGMSQIQ 419
WF + + G L + R GRP V D V KL+EE+ ++ RE++ L+ S I
Sbjct: 49 WFQKLKNGDFSLEEIERSGRP---VELNEEDLV-KLVEEEPRLSLREMEEKLECCHSTIA 104
Query: 418 IILHEQLGVKKLFSRWIPHSLCEEQKAARVTWCVRTLERFHAGSSNAVYNIVSGDE 251
L +LG W+PH L QK RV C + L + + N+V+GDE
Sbjct: 105 RHLG-RLGFTSKLGTWVPHELSASQKLTRVNVCTQLLT--FRRKFDWLNNLVTGDE 157
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 33.9 bits (74), Expect = 0.091
Identities = 24/95 (25%), Positives = 43/95 (45%)
Frame = -1
Query: 568 KLSDDPRQGRPKTAVSQENVDAVRKLIEEDRHVAYREIQATLDIGMSQIQIILHEQLGVK 389
K ++D + R + A EN K++EE++H + Q LD +++ +L EQL +
Sbjct: 349 KSTEDEKLAREQLAGELENAKEDLKVVEEEKHTGIQRAQGALDDAEKEVK-VLKEQL-ER 406
Query: 388 KLFSRWIPHSLCEEQKAARVTWCVRTLERFHAGSS 284
+ L QKA ++ + L+ SS
Sbjct: 407 AQSALESSQELASSQKADKIQELEKELQNAQKRSS 441
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 33.9 bits (74), Expect = 0.091
Identities = 24/95 (25%), Positives = 43/95 (45%)
Frame = -1
Query: 568 KLSDDPRQGRPKTAVSQENVDAVRKLIEEDRHVAYREIQATLDIGMSQIQIILHEQLGVK 389
K ++D + R + A EN K++EE++H + Q LD +++ +L EQL +
Sbjct: 349 KSTEDEKLAREQLAGELENAKEDLKVVEEEKHTGIQRAQGALDDAEKEVK-VLKEQL-ER 406
Query: 388 KLFSRWIPHSLCEEQKAARVTWCVRTLERFHAGSS 284
+ L QKA ++ + L+ SS
Sbjct: 407 AQSALESSQELASSQKADKIQELEKELQNAQKRSS 441
>U21310-1|AAA62519.1| 997|Caenorhabditis elegans Hypothetical
protein F40H6.2 protein.
Length = 997
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 261 DTMLYTAFEDPAWNLSRVLTHQVTRAAFCSSQSECGIHRE 380
DT +Y F+D + S + AF SS++ CGI E
Sbjct: 211 DTHVYIGFKDSIQDASNTYIYSYIGYAFTSSENTCGIPLE 250
>U41540-10|AAK39228.1| 372|Caenorhabditis elegans Hypothetical
protein F35H12.1 protein.
Length = 372
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -1
Query: 592 AEFQRGRVKLSDDPRQGRPKTAVSQ-ENVDAVRKLIEE 482
AE++RGR K S+ PRQ R + ++ ++ + + IEE
Sbjct: 254 AEYRRGRSKASEVPRQARQYLSKTKLPDIQIIHQQIEE 291
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,565
Number of Sequences: 27780
Number of extensions: 337328
Number of successful extensions: 1087
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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