Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3470
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    58   5e-11
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.8  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   3.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   5.4  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 58.4 bits (135), Expect = 5e-11
 Identities = 35/116 (30%), Positives = 58/116 (50%)
 Frame = -1

Query: 598 WFAEFQRGRVKLSDDPRQGRPKTAVSQENVDAVRKLIEEDRHVAYREIQATLDIGMSQIQ 419
           WF +F+ G   L D+ R GRP     + + D ++ +I+ DRH   REI   L +  + I+
Sbjct: 46  WFDKFRSGDFSLKDEKRSGRP----VEVDDDLIKAIIDSDRHSTTREIAEKLHVSHTCIE 101

Query: 418 IILHEQLGVKKLFSRWIPHSLCEEQKAARVTWCVRTLERFHAGSSNAVYNIVSGDE 251
             L +QLG  +    W+PH L E+    R+  C   L +    +   +  +++GDE
Sbjct: 102 NHL-KQLGYVQKLDTWVPHELKEKHLTQRINSC--DLLKKRNENDPFLKRLITGDE 154


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 183 KANKNCSFTECCKKNGGHVCLQN 115
           K+N  C      + NG  VCL+N
Sbjct: 145 KSNLKCDKCSTYQSNGEEVCLEN 167


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 239 RVRTRNKNQSRVWVFENELKP 177
           R +  N+NQ  +W  +  +KP
Sbjct: 11  RKKNLNQNQMMIWALDCSIKP 31


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 175 QKLFVHGVLQKKWWPR 128
           +K  V+ + +K+WW R
Sbjct: 33  EKWVVNNIKRKRWWSR 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,439
Number of Sequences: 438
Number of extensions: 3554
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)