Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3467
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   3.7  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    27   3.7  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   6.5  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 181 FIILIYLMLLDSFKVVKSIYF*-VAFIYLGIFIRRYSIV 294
           F+I   L+LL  F+   S+++  V +I LG+FIR + +V
Sbjct: 171 FVINHILILLGYFQCSYSVFYASVFYILLGVFIRVFYLV 209


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 226 VKSIYF*VAFIYLGIFIRRYSIVGL*VHVAKYIYLSKFVCNEIYYVIFA 372
           V S+   + F +L I I + S+      +  Y+YL  F+ N ++ V+FA
Sbjct: 68  VSSVLMLILFSWLAIHIPKSSVPH--ALILFYVYLIDFLLNVLFTVLFA 114


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 163 IAVLSSFIILIYLMLLDSFKVVKSIYF*VAFIYLGIFIRRYSI 291
           + V    I+L +   L S KVV S+    A I LG++  RY +
Sbjct: 760 VPVNGRLILLEFEKELQSLKVVSSMVLSAAVIDLGVYNDRYIV 802


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,719
Number of Sequences: 5004
Number of extensions: 47088
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)