Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3467
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570     33   0.32 
04_03_1041 - 21938347-21938529,21938618-21938773,21939291-219394...    28   6.8  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    28   9.0  

>04_04_0159 - 23194738-23194914,23195035-23195190,23195581-23196570
          Length = 440

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -3

Query: 715 NMYLLKKVKRNTPNEFKILLHSCFFYSLPIR 623
           N Y+LK V RN PN   + LH C F   P R
Sbjct: 359 NCYVLKSVLRNAPNLEHLRLHRCKFLGTPKR 389


>04_03_1041 -
           21938347-21938529,21938618-21938773,21939291-21939408,
           21939536-21940203,21941773-21941802
          Length = 384

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 715 NMYLLKKVKRNTPNEFKILLHSCFFYSLPIRWNRLLQ 605
           N  LL+ + +N+PN  K+ +H C F    + W +  Q
Sbjct: 301 NNELLRHLLQNSPNLEKLTVHCCKFSKGSLEWRKSSQ 337


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -3

Query: 538  REQCFAKSTTGSESRPTEKTRRETQWAVSME*FALCRNRRIRSSRCFQVNRTFSSRQK*R 359
            +E+ F +   GSE+   E TRR +   VS++  +      +RS   F + R   S +   
Sbjct: 1035 KEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLRSLHVFSIYRRIDSLEAFL 1094

Query: 358  NRFRYIQT 335
              F+++ T
Sbjct: 1095 KSFKFLST 1102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,853,259
Number of Sequences: 37544
Number of extensions: 259385
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)