Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3465
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   0.55 
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    27   2.2  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    27   3.9  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    26   6.8  
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    25   9.0  

>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 609 ANTNPSKKPCFAESTTGSETRPTGEDPARNSVG 707
           ANT  S  P  +  T G E RP+  +PA +  G
Sbjct: 173 ANTETSNPPFASAQTQGQEHRPSSPNPAEHMTG 205


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 257 SMSMCRATYRYHKVCIQLRFSLNY***NFSHNYVAYLSVNVLCDKIALK 403
           +M MC  T RYH   + L+ +L        HN    ++ N+LC K A K
Sbjct: 754 NMMMCNNTSRYHVARMALQHAL--------HNPTVAVNCNMLCAKYAWK 794


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 588 GLKPDDVANTNPSKKPCFAESTTGSET 668
           G K DD+ N  P K     E+T  SET
Sbjct: 10  GSKSDDIGNKTPKKNGIEHEATKSSET 36


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 670 RVSDPVVDSAKHGFLLGFVLATSSGLSPVSS 578
           R++DP V S  HG  +  VL   SG + +S+
Sbjct: 195 RIADPEVMSFSHGEAIDVVLPMQSGSTVISA 225


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 168 TSGFRIHVDFVKVQQ*VICL 227
           TSGF IH +  KV+  VIC+
Sbjct: 91  TSGFAIHYEMHKVRPEVICV 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,484
Number of Sequences: 5004
Number of extensions: 50595
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)