Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3465
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRN...    28   6.4  

>Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical
           protein C25A1.7 protein.
          Length = 970

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 338 NFSHNYVAYLSVNVLCDKIALKS 406
           NFS NYV Y+   + CDK+  +S
Sbjct: 783 NFSANYVKYVRDRLYCDKVGSES 805


>AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 972

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 338 NFSHNYVAYLSVNVLCDKIALKS 406
           NFS NYV Y+   + CDK+  +S
Sbjct: 783 NFSANYVKYVRDRLYCDKVGSES 805


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,890,493
Number of Sequences: 27780
Number of extensions: 273056
Number of successful extensions: 553
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)