Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3464
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   3.6  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   6.3  
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    26   6.3  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   6.3  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   8.3  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   8.3  

>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 543 TARSENYTHR-IFQLPNLISGDECNKFASDFDHPIVYSNN 659
           T    N+  R +  LPN +S D  N+F S+ + P  Y  N
Sbjct: 469 TLTLNNFQQRKLTPLPNSMSFDSLNEFESERNTPSTYGQN 508


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
 Frame = -1

Query: 545 CRTHRQLVQSSVPCRFS----RQCPHFDSSKQRVNSPATLIDNWNVSVCSKYR*ILKCP 381
           CR  +     S PC+       QC + DS K+R  S   + +      C +Y   L CP
Sbjct: 41  CRAKKIRCSGSEPCQACIATPSQCKYADSLKERTPSKQFIAELSQRQKCFEYLMELLCP 99


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 533 RQLVQSSVPCRFSRQCPHFDSSKQRVNSP 447
           + L ++++P R    C H +SSK  +N P
Sbjct: 264 KDLEKANLPPRIMIDCSHGNSSKNHLNQP 292


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 299 HLFLP*SSNAFWFEGWGSRCNYTETLELISQDVWRIY 189
           +LF P  SN+ WF  W SR      L +ISQ    +Y
Sbjct: 768 NLFAP--SNS-WFNSWHSRLELDSILAIISQFSLPVY 801


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 546 ARSENYTHRIFQLPNLISGDE 608
           A S++   R+ QL NLI+GDE
Sbjct: 410 ASSQSIPTRVLQLHNLITGDE 430


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 585 PNLISGDECNKFASDFDHPIVYSN 656
           PNL+S  E  K   DF++ I Y N
Sbjct: 241 PNLVSSTENEKPRVDFNYAIAYMN 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,307
Number of Sequences: 5004
Number of extensions: 61666
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)