Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3462
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    28   1.2  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    25   8.4  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   8.4  

>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 321 LFSKIG-RDRPSFSTFPTPAPEGPDLTDIVSLF 416
           +FSK G   RPS+S+     PEGP + ++  +F
Sbjct: 137 IFSKAGVLTRPSYSSVCQLGPEGPSVENVQGIF 169


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 172 AKSLDRIHPSTTYNDLQ 222
           A+S+D  HPST Y+D +
Sbjct: 199 AQSIDVFHPSTEYSDYE 215


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 542 IFENYNADDVPGYTNGLSNFVHETDFNDDDSIPDNRSD 429
           I+EN   +     TN  SN  + +  NDD   P++ +D
Sbjct: 17  IYENKENEYQTNITNETSNVQNLSSGNDDQQYPNSTND 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,307
Number of Sequences: 5004
Number of extensions: 38071
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)