Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3458
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...   107   1e-24
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    30   0.22 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   4.8  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   6.3  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   8.3  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   8.3  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.3  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   8.3  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score =  107 bits (257), Expect = 1e-24
 Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
 Frame = +1

Query: 118 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 297
           +H  +   ATLK I  RLKS+KNI+KIT+++K V+  K TRA+R ++A+  Y   + + +
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83

Query: 298 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSR 474
           + A    PE+  K L VA +SD+GLCG +H+ +S++IR  L +P   EN  +  +G+K R
Sbjct: 84  KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVR 142

Query: 475 GILQRLYGKHIITVANEIGRLPPTFLDASQLATAIL 582
             L R   +        IG   P+F +A Q+++ IL
Sbjct: 143 TQLLRFCPESFYLTFAHIGGASPSFEEALQISSNIL 178


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = +1

Query: 316 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 480
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA ++ +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 481 LQRLYGKHIITVA 519
           L  +Y    + VA
Sbjct: 129 LMTVYSLGELAVA 141


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 349 AMTSDRGLCGAVHTGVSKVIRNRLSE 426
           A+ SD  +C  V TG+S   ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 172  KSVKNIQKITQSMKMVSAAKYTRAERDLK 258
            + VKN+Q    S+K +SAA +TR    +K
Sbjct: 958  QQVKNMQLELASLKQISAAFFTRIPLKIK 986


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 133  RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDL 255
            +N    KAI I  K VKNI   T ++++       RA + L
Sbjct: 1071 KNKQPRKAILIEFKGVKNINAETVTLRVKDLTHLHRAYKGL 1111


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 322 EDDPKQLFVAMTSDRGLCGAVHT--GVS 399
           + +P  L VA+ SDR  CG+++   GVS
Sbjct: 876 KQNPYDLLVALDSDRKACGSLYVDDGVS 903


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = -1

Query: 567 QLTCVQESRWETSNLISNSNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRY 394
           +L  + ES+++T+    ++     +  + D  R+I   D  D +    +ET+A  F+Y
Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +1

Query: 58  ICKMLGRFGPGVGTQVVAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKY 234
           +   LG F   VG    A V   P  N+A  +   +R K+V ++ K+   +      +Y
Sbjct: 69  LADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQY 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,803
Number of Sequences: 5004
Number of extensions: 58555
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)