Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3458
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 66 3e-11
07_03_0571 - 19602755-19603831 62 4e-10
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 31 0.92
08_02_0730 - 20472851-20473075,20473332-20474285 29 2.8
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274... 29 2.8
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805... 29 2.8
12_02_1080 - 25911521-25911922 28 4.9
03_05_0287 + 22759946-22760836 27 8.5
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 65.7 bits (153), Expect = 3e-11
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Frame = +1
Query: 151 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDD 330
+A+ R+KSV+NIQKIT++MKMV+A+K + + +R + F P D
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116
Query: 331 PKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 501
K + VA+TSD+GLCG +++ VSK + S P E+ K + +G+K + L R
Sbjct: 117 KKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLIRDSKD 175
Query: 502 HIITVANEIGRLP 540
+I +E+ + P
Sbjct: 176 NIEMTVSELQKNP 188
>07_03_0571 - 19602755-19603831
Length = 358
Score = 61.7 bits (143), Expect = 4e-10
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Frame = +1
Query: 145 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPP 321
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+ Y +
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96
Query: 322 ED----------DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGD 465
ED K V +T +RGLCG+ + V K R+ E ++ V+ VG
Sbjct: 97 EDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGK 156
Query: 466 KSRGILQR 489
K R
Sbjct: 157 KGNAYFIR 164
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 30.7 bits (66), Expect = 0.92
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = -1
Query: 537 ETSNLISNSNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRYTSVYSSAQTSVR 358
E + SN+++ L ++ D S + LDVL + VAD + + +A+ +
Sbjct: 105 EVAECESNAHNDLEQITMDDIGELYSLCEELDVLDDDSSSWVADPWSSFQLVPTAEATDV 164
Query: 357 GHSNKQLLGVIFGRCNLSP 301
+ LG I G C SP
Sbjct: 165 DDAVVAALGAIDGSCRPSP 183
>08_02_0730 - 20472851-20473075,20473332-20474285
Length = 392
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 516 NSNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRYT 391
+S DV+ + SL+D A FI H L + + + + +H +T
Sbjct: 346 DSQDVVPIDSLEDEALFIGHNGTLCLSTKDYPALLPNHVYFT 387
>05_06_0223 -
26525618-26526112,26526203-26526370,26526649-26527473,
26527898-26528004,26529701-26529767
Length = 553
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Frame = -1
Query: 453 DHLDVLSTRFAETVADHF---------RYTSVYSSAQTSVR---GHSNKQLLGV-IFGRC 313
D+L ++S A V D F ++ SV T++R GH +++L V I G C
Sbjct: 369 DYLSLVSVLHASPVLDTFILSVQQGGMKHDSVSGDTTTNLRTMPGHKHERLKEVMIIGFC 428
Query: 312 NLSPFIELYCTFTIGTSSFQVTLSTGVFSS*HHLHGL 202
+ + +EL C T+S + T++ H L +
Sbjct: 429 SATSMVELTCHILENTTSLE-TITLDAVCDVHDLENI 464
>03_06_0737 +
35879723-35879990,35880105-35880201,35880464-35880591,
35880686-35880767,35880855-35880918,35880930-35881022,
35881120-35881178,35881391-35881826,35882050-35882120,
35882201-35882351
Length = 482
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -2
Query: 428 GSLRRLRITLDTPVCTAPHKPLSEVIAT---NNCLGSSSGGVTSA 303
GSL+R R++ PH S I + C+GSS G TSA
Sbjct: 337 GSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSA 381
>12_02_1080 - 25911521-25911922
Length = 133
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 115 PPPRLGCPHPVRSVPTFCKFYGCLSVKFTSRRKNVAG 5
P P P P S P + YGC++ RR+ + G
Sbjct: 33 PVPYCPLPSPSLSTPLHARSYGCVATAREERRRRLDG 69
>03_05_0287 + 22759946-22760836
Length = 296
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 238 RAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGL 372
R+ DLK P+ G + ERA + ++DP +FV D G+
Sbjct: 223 RSVIDLKPVLPWPIGKPKGKERACLAVVDEDPDVIFVGTEEDDGV 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,889,277
Number of Sequences: 37544
Number of extensions: 431987
Number of successful extensions: 1225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -