Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3457
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0856 + 23708234-23708420,23709364-23709567,23709689-237099...    29   4.0  
06_03_0081 - 16361334-16361708,16362115-16362339,16362433-163625...    28   5.2  
02_02_0179 + 7500647-7500779,7503021-7503222,7503356-7503427,750...    28   5.2  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    28   6.9  
05_05_0200 - 23171803-23171906,23172304-23173951                       27   9.2  
04_04_1057 - 30451759-30452523,30452627-30452701,30453180-304532...    27   9.2  

>12_02_0856 +
           23708234-23708420,23709364-23709567,23709689-23709918,
           23710174-23710174,23710268-23710788
          Length = 380

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 87  LNLKRYLITENFFIIIHILYKAKQNGRRLQNVDRRVSSHH 206
           LNLK Y  T  F  +I +   A Q+G R+ +V   V   H
Sbjct: 277 LNLKLYAKTSGFSDVIRLFQGAAQSGHRISSVVAVVRRSH 316


>06_03_0081 -
           16361334-16361708,16362115-16362339,16362433-16362548,
           16362613-16362699,16363059-16363458
          Length = 400

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 440 ITRSVSTRKSYLNYQSSEPQKAPMNRSTNARNWYSHTSTGSMTSFVWKTNRYMITGGPSD 619
           I R + T    L+Y S E Q A    +  A + ++H ST  M +F +    Y  +G  +D
Sbjct: 183 IHRDIKTANILLDY-SWEAQVADFGLAKLANDTHTHVSTRIMGTFGYLAPEYASSGKLTD 241

Query: 620 R 622
           R
Sbjct: 242 R 242


>02_02_0179 +
           7500647-7500779,7503021-7503222,7503356-7503427,
           7503655-7503726,7504212-7504283,7504711-7504782,
           7505045-7505116,7505209-7505280,7505688-7505759,
           7506215-7506292,7506670-7506729,7506810-7506848,
           7506949-7506998,7507110-7507480,7508467-7508662,
           7508856-7508936,7509694-7509848,7510302-7510512,
           7510648-7510882,7510995-7511145,7511813-7512181
          Length = 944

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 147 KAKQNGRRLQNVDRRVSSHHQRE 215
           + KQ GR L+ VD+R+ SH+ +E
Sbjct: 825 RLKQEGRLLEIVDQRLGSHYSQE 847


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 87  LNLKRYLITENFFIIIHILYKAKQNGRRLQNVDRRVSSHH 206
           LNLK Y  T  F  +I +     Q+GRR++++   V   H
Sbjct: 238 LNLKLYAKTSGFSDVIRLFRGVAQSGRRIRSLVAVVRRSH 277


>05_05_0200 - 23171803-23171906,23172304-23173951
          Length = 583

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 299 SPLPVSPTYSQWVKVVSSPNHLVRDSFSLSLVMRGDTPV 183
           SPL  SPT         +P+ L RD F ++L + G  P+
Sbjct: 525 SPLGGSPTMGDRTMKAPTPSVLHRDGFDINLFIIGTEPM 563


>04_04_1057 -
           30451759-30452523,30452627-30452701,30453180-30453254,
           30453503-30453591,30454058-30454157,30454244-30454388,
           30454609-30454658,30455033-30455114,30455200-30455282,
           30455360-30455429,30455523-30455632,30455719-30455872,
           30456639-30456796,30457338-30457517
          Length = 711

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 442 NEISFYEKVLPELSKFRASKSAHEPFDK 525
           N+ +FY + L E+S  RA    H+P D+
Sbjct: 147 NQPAFYHQALVEVSLLRALNQTHDPDDQ 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,606,736
Number of Sequences: 37544
Number of extensions: 316719
Number of successful extensions: 913
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)