Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2495
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.12
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.1
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 27 3.5
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 3.5
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 26 4.6
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 6.0
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 26 6.0
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 6.0
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 8.0
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.5 bits (68), Expect = 0.12
Identities = 31/119 (26%), Positives = 56/119 (47%)
Frame = -2
Query: 639 NGSMSSNFIPKLIKNLSSSWPAE*GIVAVGVRNSMLTANPAISTGNVLDPGHESKKATTF 460
+ S+S++ IP + SS+ + + +S TA+ + S+ +++ S + T
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSS------LSSSSSSSTASSSSSSSSIISSSSSSSSSPTS 285
Query: 459 PSLMMGAEIP*SPMSPTGNMDTFLVRLISSNSCKSTVLSSSPKYMTPSRTFSRNQTRAA 283
S + + S SPT T SS+S ST+ SSS M+ S +FS + T ++
Sbjct: 286 TSSTISSSSS-SSSSPTSTSSTISSSSSSSSSFSSTLSSSS---MSSSSSFSSSPTSSS 340
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 104 GHTLMHVPRIHWIIADDQSLCSTNVLNLL 190
G+ L V HW + D+ +LCS VL+ L
Sbjct: 2019 GYLLKAVEEGHWFVLDNANLCSPAVLDRL 2047
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 82 LFWSWISRRDVIYHFQIALIRYSFV 8
+FW W RR + F IAL F+
Sbjct: 49 IFWRWSRRRTIREQFHIALFSVLFI 73
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = -2
Query: 384 RLISSNSCKSTVLSSSPKYMTPSRTFSR--NQTRAARLFETPRGKFVP-LYTYGFGLEIC 214
+ + NS K+T+ S+ T S + R+F+ P + ++ G +++
Sbjct: 166 KTLEKNSAKATINKSNSTAETSSTATVEPYDSNDLYRIFDRPDAVVLSYIFVLGKAVDLL 225
Query: 213 VNGKPVRLSKLRTLVEHKDWSSA 145
+ ++LSK + L+E + WS A
Sbjct: 226 QIKQWLQLSKQKNLLEFEFWSQA 248
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 186 YLGGRACHSHIFPVQSHTCTKVQTSRVAF---RTDVQPWFGCGRTFE 317
YL H + +T +++ R+A R D + W+G G+T+E
Sbjct: 371 YLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRKDYRAWYGLGQTYE 417
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 660 TFEQLSANGSMSSNFIPKLIKNLSSSWPAE*GIVAVGVRNSMLTANP 520
T ++ N S SN IPK NLS+SW G + + + NP
Sbjct: 546 TQPDVNENYSFISNSIPK---NLSTSWNQNMGYHVTNSNSELASQNP 589
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 459 PSLMMGAEIP*SPMSPTGNMDTFLVRLISSNSCKSTVLS-SSPKY 328
P+L++G ++ + TG +V + N CK T +S S P++
Sbjct: 573 PTLILGGDVYHPGVGATGVSIASIVASVDLNGCKYTAVSRSQPRH 617
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -1
Query: 172 G*TQRLVVCNDPMYPRHVHQCVAKPS*LWNLFWSWISRRDVIYHFQIAL 26
G T RL+ + P ++ + K + +L W + ++R+ Y I L
Sbjct: 969 GLTDRLIEIDSPYIQSYLERNSTKDMKIADLLWQYYAKREQYYQASIVL 1017
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 266 GVSNRRAALVWLRENVREGVMYFGDDDNTVDLQLFDEIRRTKKVS-MFPVGLIGDY 430
G+SNR V L + R DD++V + LFD+ ++T ++ F V L DY
Sbjct: 861 GISNR----VDLSSDDRIKSFIVAPDDSSVKITLFDDSQKTIALTDRFQVYLYSDY 912
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,683
Number of Sequences: 5004
Number of extensions: 71362
Number of successful extensions: 228
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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