Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2491
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 69 6e-13
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 62 6e-11
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 54 1e-08
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 52 6e-08
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 48 1e-06
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 41 1e-04
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 29 0.48
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 29 0.48
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 27 2.6
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 27 3.4
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 4.5
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 26 5.9
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 26 5.9
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 25 7.8
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.8
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 68.9 bits (161), Expect = 6e-13
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 1/146 (0%)
Frame = +2
Query: 44 EPPPLDAVIEAEALLRELGCLDAEDALTPLGTILAKLPIEPRLGKMMVLGFVLGVGDALT 223
+PPP +I A L L LD E LTPLG +A P+EP+L K+++ LG + +
Sbjct: 893 DPPPAQTMIAALQNLYALSALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELGCSEEML 952
Query: 224 TMAANSTTFPEIFVL-EGRRRLSMHQRALGGDRASDHVAMLNAFQMWEREHNKGEEAELR 400
++ A + P I+ +++ + QRA + SDH+ +LN + W K
Sbjct: 953 SIIA-MLSVPNIWSRPREKQQEADRQRAQFANPESDHLTLLNVYTTW-----KMNRCSDN 1006
Query: 401 WCEWKGVQQTTLRVTYEAKHQLINIL 478
WC +Q +R + + QLI ++
Sbjct: 1007 WCYEHYIQARGMRRAEDVRKQLIRLM 1032
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 62.5 bits (145), Expect = 6e-11
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Frame = +2
Query: 11 GAIGHFLSKAPEPPPLDAVIE-AEALLRELGCLDAEDALTPLGTILAKLPIEPRLGKMMV 187
G+I F++ +PP DA ++ A L ++G L + LT LG L LPI+ +LGK++V
Sbjct: 981 GSIKKFMNSLIDPPN-DATVDLALKKLIQVGALTVSEDLTGLGEYLVSLPIDLKLGKLLV 1039
Query: 188 LGFVLG-VGDALTTMAANSTTFPEIFVLEGRRRLSMHQRALGGDRASDHVAMLNAFQMW- 361
G + G + ALT A ST P + E R S + G D +A + W
Sbjct: 1040 FGSIFGYLEPALTITAILSTKSPFLGDDEAREIRSKQSQGWG-----DVLADARVYHNWL 1094
Query: 362 EREHNKGEEAELRWCEWKGVQQTTLRVTYEAKHQL 466
E +G + ++WCE + TTL+ + +++L
Sbjct: 1095 EILETRGVKKTVQWCEEMHLHYTTLQQIRQNRNEL 1129
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 54.4 bits (125), Expect = 1e-08
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +2
Query: 5 RLGAIGHFLSKAPEPPPLDAVIEAEALLRELGCLDAEDALTPLGTILAKLPIEPRLGKMM 184
++G + L KA +PP +I A L ++G L + LT LG L++LP++ LGK++
Sbjct: 1064 QMGDVQDVLGKALDPPSSTNIIRALEKLHQVGALSENEKLTKLGKFLSQLPVDANLGKIL 1123
Query: 185 VLGFVLGVGDALTTMAANST 244
VLG DA +++ A T
Sbjct: 1124 VLGCFYKCVDAASSIVAMLT 1143
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 52.4 bits (120), Expect = 6e-08
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Frame = +2
Query: 50 PPLDAVIEAEALLRELGCLDAEDALTPLGTILAKLPIEPRLGKMMVLGFVLGVGDALTTM 229
PP D ++ + L LG LD LT LG ++ P++P L K++++ + + T+
Sbjct: 875 PPNDTLMASLYELWTLGALDNFGKLTTLGKKMSLFPMDPSLSKLIIIAEDYKCTEEIITI 934
Query: 230 AANSTTFPEIFVL-EGRRRLSMHQRALGGDRASDHVAMLNAFQMWEREHNKGEEAELRWC 406
+ + P +F + R S R SDH+ +LN +Q W+R WC
Sbjct: 935 VS-MLSVPSVFYRPKERAEESDAAREKFNVPESDHLMLLNIYQHWQRNGYSNS-----WC 988
Query: 407 EWKGVQQTTLRVTYEAKHQLINILT 481
+ TL+ + + QL+ I++
Sbjct: 989 SKHFLHSKTLKRARDIRQQLVEIMS 1013
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 48.4 bits (110), Expect = 1e-06
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Frame = +2
Query: 44 EPPPLDAVIEAEALLRELGCLDAEDALTPLGTILAKLPIEPRLGKMMVLGFVLGVGDALT 223
+PP + ++ A L L CLD LTPLG ++ P++P L M++ + +
Sbjct: 466 DPPAPETMMRALEELNYLNCLDDNGDLTPLGRKASEFPLDPNLAVMLIRSPEFYCSNEVL 525
Query: 224 TMAANSTTFPEIFVL-EGRRRLSMHQRALGGDRASDHVAMLNAFQMWEREHNKGEEAELR 400
++ A + P +FV R+L+ R DH+ +LN + + K E
Sbjct: 526 SLTA-LLSVPNVFVRPNSARKLADEMRQQFTHPDGDHLTLLNVYHAY-----KSGEGTAD 579
Query: 401 WC 406
WC
Sbjct: 580 WC 581
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 41 PEPPPLDAVIEAEALLRELGCLDAEDALTPLGTILAKLPIEPRLGKMMVLG 193
P P + ++ LL LG +D+E LT LG ++ P+ PR KM+++G
Sbjct: 841 PTSPGRSRLEKSLKLLSNLGAIDSEGVLTKLGEQMSLFPLSPRFSKMLIIG 891
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 29.5 bits (63), Expect = 0.48
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 380 GEEAELRWCEWKGVQQTTLRVTY 448
GE A W +WKG+ TL ++Y
Sbjct: 445 GESAAYAWSQWKGLYNLTLNMSY 467
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 29.5 bits (63), Expect = 0.48
Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 3/146 (2%)
Frame = +2
Query: 50 PPLDAVIEAEALLRELGCLDAEDALT-PLGTILAKLPIEPRLGKMMVLGFVLGVGDALTT 226
PP ++ A L LG LD LT PLG ++ ++ + K ++ G + +
Sbjct: 411 PPTVHLMAALEDLYLLGVLDESGNLTDPLGIQISNSFLDANISKALLTSNQFGCTHEILS 470
Query: 227 MAANSTTFPEIFV--LEGRRRLSMHQRALGGDRASDHVAMLNAFQMWEREHNKGEEAELR 400
+A+ T E+F + + + D + LN F+ + G + +L+
Sbjct: 471 IASILTA-GEVFYNPTSSSKNDAFVAHSSFFANEGDIITALNVFESFV-----GNKKDLQ 524
Query: 401 WCEWKGVQQTTLRVTYEAKHQLINIL 478
WC + TLR + + L+ L
Sbjct: 525 WCRKNYLNYQTLRQALDIRTHLVRFL 550
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 185 VLGFVLGVGDALTTMAANSTTFPEIFVLEG 274
VLGF +G+G + T N T+P + + G
Sbjct: 1132 VLGFNVGIGGGMGTTHNNKKTYPRLATVVG 1161
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 164 PRLGKMMVLGFVLGVGDALTTMAANSTTFPE 256
P L K++ F +G+GD + A ST PE
Sbjct: 307 PNLIKVVPYEFFVGIGDINSNFLAKSTPLPE 337
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = -1
Query: 364 LPHLESIQHGHVVGGPVSAQGSLVHRQSPPAFEHEYFRERCRVSRHRGQ 218
+P+L+ ++H H+ +S + P F+ Y+++ S+HR +
Sbjct: 761 IPYLDPLEHMHIESSTLSLSLRKLEILEPKLFDSPYYKD----SKHRAE 805
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 166 SPRQNDGVRLRAWRGRRSDHDG 231
SP D L+ WRG S H G
Sbjct: 108 SPTSEDAKSLKNWRGSESKHTG 129
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 354 WKAFNMATWSEARSPPRAL 298
W ++N A ++EA PP+A+
Sbjct: 403 WNSYNQAHFNEAHPPPKAV 421
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 336 ATWSEARSPPRALWCIDSRRRPSSTNISGNVVELAAIVVRASPTPSTKPN 187
AT S ++P SRR+ + ++ S + ++ PTP TKP+
Sbjct: 589 ATSSIKKNPSSIFRRFSSRRKQNKSSTSTLQISAPLETSQSPPTPRTKPS 638
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Frame = +2
Query: 530 PNGP--GPNFGLGHSPHVHGP 586
P GP GP G GH +HGP
Sbjct: 102 PRGPLFGPRIGGGHHGPLHGP 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,016
Number of Sequences: 5004
Number of extensions: 49587
Number of successful extensions: 152
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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