Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2489
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical pr...   204   2e-53
Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    29   2.5  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   2.5  
Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ...    27   7.6  
AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical ...    27   7.6  
Z77662-1|CAB01201.1|  173|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical
           protein F55H2.2 protein.
          Length = 257

 Score =  204 bits (499), Expect = 2e-53
 Identities = 96/144 (66%), Positives = 117/144 (81%)
 Frame = +1

Query: 67  GKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVM 246
           GKDR+A+FPSR AQ L+K RL GA KGH LLKKKADAL +RFR IL KI+E K LMGEVM
Sbjct: 5   GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVM 64

Query: 247 KEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELA 426
           KEAAFSLAEAKFT GDF+  V+QNV++AQ ++R KK+NV GV LP+F++YQDG D Y+L 
Sbjct: 65  KEAAFSLAEAKFTAGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDLT 124

Query: 427 GLARGGQQLAKLKKNXQSAVKLLV 498
           GL +GG  +A+LKKN   A++LLV
Sbjct: 125 GLGKGGANIARLKKNYNKAIELLV 148


>Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical
           protein Y57G11A.3 protein.
          Length = 298

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 325 KAQIKIRSKKDNVAGVTLPIFES---YQDGSDTYELAGLARGGQQLAKLKKNXQS 480
           K  IKI  +  ++  +   +FE+    +D +   ELA L  G Q+L K+KK+ ++
Sbjct: 21  KKPIKIEGRSGDLKQLKSALFENKGPVKDEAREEELAALKAGNQELKKMKKDFET 75


>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 94  SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 252
           ++G Q    G LA   K  GL K++ +  +  F  ++ K  +  TLM   +KE
Sbjct: 87  NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 139


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 94  SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 252
           ++G Q    G LA   K  GL K++ +  +  F  ++ K  +  TLM   +KE
Sbjct: 191 NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 243


>Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical
           protein W06G6.3 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = -2

Query: 350 LDLILI*ALVTFCSTTWLKSPVVNLASAKEKAASFITSPIRVLVSMILLKII 195
           L  +++ ++VTFC + W++  +V     KEK A    S   +L++M L+K +
Sbjct: 181 LAFLMVTSVVTFCGSLWIRHFLVRF--LKEKTARL--SKTTILLNMQLVKAL 228


>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
            protein Y46G5A.1a protein.
          Length = 1085

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 346  SKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNXQSAVKLLV 498
            SK+D V     P   ++   S  Y+ +  +RGG  LA+  ++ +S   +L+
Sbjct: 980  SKRDFVQSSNTPTTTTHSSSSHRYQHSNSSRGGTPLAQRLRDERSGQVVLL 1030


>AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical
           protein Y41G9A.4b protein.
          Length = 860

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 142 KGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDFNQVVLQNV 321
           K + +LKK+ + LQ++      KI E K  + E+ K +      A+    +  Q+  +N+
Sbjct: 756 KRYDMLKKENETLQIQIEEKERKIHECKERLEELTKNSETEDMNAQLLCENDKQIADENL 815

Query: 322 T 324
           T
Sbjct: 816 T 816


>Z77662-1|CAB01201.1|  173|Caenorhabditis elegans Hypothetical
           protein F47B8.1 protein.
          Length = 173

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 377 SQSLSHTRMVLIPMSWLVWPVVGSSLQSSRR 469
           SQ +    +VL+ + +++WPV+ +SL +S R
Sbjct: 76  SQRIIAVVVVLVVIQFMIWPVLFASLAASGR 106


>AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical
           protein BE0003N10.1 protein.
          Length = 745

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 291 SSCELSFSQRESSFFHYFTHKGFSLNDF 208
           S  +L  SQR+ SF  ++   GF++N+F
Sbjct: 386 SVAQLLGSQRKKSFMLHYEFPGFAINEF 413


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,121,641
Number of Sequences: 27780
Number of extensions: 221698
Number of successful extensions: 501
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)