Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2488
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    30   0.29 
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   8.3  

>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +3

Query: 204 SVLLFKQIKQQR*NFC*RPERSRSGPLVNYNTIELSIEFNKRRQSYVTGANRVLLKIGHI 383
           S + F  + +Q  N+   PE  R   L + N  ELSI+  K+ +  V  A + LL+  H+
Sbjct: 482 SSVSFLSLHEQIKNYKFNPELQRLLKLRSENN-ELSIQDEKKLRILVAAAEKELLRAAHV 540

Query: 384 IQQNC 398
           I   C
Sbjct: 541 ICCTC 545


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 497 EIKFE*CPLRECPRPNALFCK 559
           EI +   PL  CPR    FCK
Sbjct: 325 EIGYSHAPLLHCPRKGRCFCK 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,336
Number of Sequences: 5004
Number of extensions: 51723
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)