Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2488
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023856-1|CAA19566.1|  327|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL132895-4|CAC14401.1|  333|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AL023856-1|CAA19566.1|  327|Caenorhabditis elegans Hypothetical
           protein Y94A7B.4 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 138 YIILFYHQ*FSQGTRCKEYFRYFFYTLGYIIGVLVRIPI 22
           Y ILF     ++  RC  Y RY F  + Y+ G+   IPI
Sbjct: 113 YFILFVE---NRPRRCWRYLRYPFLIINYLFGITYFIPI 148


>Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical
           protein F35H8.2 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 279 PLVNYNTIELSIEFNKRRQSYVTG-ANRVLLKIGHIIQQNC 398
           P+   N I+ +I FNK  + Y+T   NR LL+  H   +NC
Sbjct: 41  PIAPNNEIDCAIMFNKSSEDYLTYIENRTLLETTH-NDRNC 80


>AL132895-4|CAC14401.1|  333|Caenorhabditis elegans Hypothetical
           protein Y59A8A.4 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 123 YHQ*FSQGTRCKEYFRYFFYTLGYIIGVLVRIPIV 19
           Y Q F+Q ++ + YFRY F  + Y+  +L  +P++
Sbjct: 117 YFQIFAQQSQWR-YFRYPFLFINYLWAILYCVPVI 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,864,005
Number of Sequences: 27780
Number of extensions: 289400
Number of successful extensions: 548
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)