Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2486
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0050 + 14469879-14470072,14470620-14471094                       30   2.1  
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758...    29   2.8  

>10_08_0050 + 14469879-14470072,14470620-14471094
          Length = 222

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = -3

Query: 535 IQSVKRGIN**TPPRLFLP*SSNAFRFEGWGSRCNYTETLELMSQGGWRI 386
           I+  KRG +   PP  FLP S  A     W   C+   T E+    GWRI
Sbjct: 22  IEGSKRGDSFHLPPSFFLPKSRRASEEIYW---CSLQSTREVRMVEGWRI 68


>08_01_0783 +
           7585326-7585477,7586420-7586589,7586687-7586801,
           7586887-7587055,7587185-7587319,7587409-7587728,
           7587992-7588127,7588224-7588472,7588567-7588787,
           7588906-7589164,7589264-7589971,7590095-7590424
          Length = 987

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 73  YNYLLHNVYRCHILRTLTQEI-TFESEWSLSTCNVIMF 183
           + Y+ H  YRC ILR L +   T  +   LS C  +MF
Sbjct: 191 HQYVSHREYRCEILRCLVKIYQTLPNPDYLSICQCLMF 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,330,006
Number of Sequences: 37544
Number of extensions: 394767
Number of successful extensions: 578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)