Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2486
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38378-3|AAA79750.2|  335|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U38378-2|AAR12974.1|  403|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z82282-7|CAB05280.2|  584|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U38378-3|AAA79750.2|  335|Caenorhabditis elegans Hypothetical
           protein R11F4.2a protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 55  LMECIIYNYLLHNVYRCHILRTLTQEITFESEWSLSTCNVIMFYMYC 195
           LM CI+++YLL N+    +  TL + + F+   S  T +   FY  C
Sbjct: 241 LMVCIVFSYLLANILNVGV--TLWEYVAFQ---STQTGDAYAFYETC 282


>U38378-2|AAR12974.1|  403|Caenorhabditis elegans Hypothetical
           protein R11F4.2b protein.
          Length = 403

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 55  LMECIIYNYLLHNVYRCHILRTLTQEITFESEWSLSTCNVIMFYMYC 195
           LM CI+++YLL N+    +  TL + + F+   S  T +   FY  C
Sbjct: 241 LMVCIVFSYLLANILNVGV--TLWEYVAFQ---STQTGDAYAFYETC 282


>Z82282-7|CAB05280.2|  584|Caenorhabditis elegans Hypothetical
           protein T07G12.10 protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 667 YSLPKIPKKHLLT*YHSPPKKLGKRPYVLK*IDQELKIESTPAYIQSVKR 518
           YS PK PK +    Y    ++  +R   L  + + +KIE  PA  +S KR
Sbjct: 246 YSTPKNPKSNSSVPYQEGKRRSSRRLSTLSSLKETVKIE--PAVSKSTKR 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,805,414
Number of Sequences: 27780
Number of extensions: 351516
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)