Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2485
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0965 + 33136373-33136512,33136595-33136688,33136845-331368... 34 0.071
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 30 1.1
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 29 2.0
11_01_0753 + 6333019-6333108,6333427-6333603,6333783-6333836,633... 29 2.7
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 29 2.7
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 29 3.5
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 28 6.1
08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,438... 27 8.1
07_03_0762 + 21324550-21325414,21325606-21325746,21325993-213261... 27 8.1
>02_05_0965 +
33136373-33136512,33136595-33136688,33136845-33136889,
33137007-33137174,33137247-33137331,33137531-33137637,
33137918-33137998,33138232-33138284,33138361-33138460,
33138911-33139054,33139268-33139364,33139528-33139611,
33139904-33140123,33140204-33140297,33140406-33140975,
33141348-33141449,33141564-33141656,33141834-33141836
Length = 759
Score = 34.3 bits (75), Expect = 0.071
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = -2
Query: 138 APSGLASNSDRTXLRVVLCRGGSDDGSHKGESYND 34
A SGL N DRT L VV G ++ G+H G SY +
Sbjct: 278 AVSGLEDNLDRTLLVVVSDHGMTEGGNHGGSSYEE 312
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = -1
Query: 322 MVSSLVSEVRNGFGFAVSVR---VTVASSHSNNNVRLVVV--VESLLQLTSFATYDAVGS 158
+V+ L E+ + FGF V + A SH N NVR + + L D + +
Sbjct: 1072 VVAELAEELWDRFGFDVFTDYSGIFDALSHKNYNVRAAAAEALAAALDENLDKMQDTLST 1131
Query: 157 LEIVVVSSIGAGVEF 113
L + + +GAGVEF
Sbjct: 1132 LFSLYIRDLGAGVEF 1146
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 424 PHNPVLRLHYLNLSRE-FRSLARGGGDLRNRFTLSMVSSLVSEVRNGFGFAVSVRVTVAS 248
PH +++S + F SL G+ ++ L +L+S++++GFG + VTV S
Sbjct: 117 PHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMS 176
Query: 247 SHSNNNV 227
+ +
Sbjct: 177 AMGEEQI 183
>11_01_0753 +
6333019-6333108,6333427-6333603,6333783-6333836,
6334015-6334164,6334271-6334612
Length = 270
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -2
Query: 117 NSDRTXLRVVLCRGGSDDGSHKGESYNDDQFHF**FWFV 1
NSD T V+ G + D ESYND Q HF WFV
Sbjct: 74 NSDETPAANVIHAGWNVDP----ESYNDSQTHFTTSWFV 108
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 252 ATVTRTLTANPKPLRTSLTRLDTMLRVNLFLRSPPPRAKL 371
A TL ++P P + T + V L LRSPPPR L
Sbjct: 2 AATAVTLPSSPAPFPVTTTASSSR-NVRLLLRSPPPRRAL 40
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 424 PHNPVLRLHYLNLSRE-FRSLARGGGDLRNRFTLSMVSSLVSEVRNGFGFAVSVRVTVAS 248
PH +++S + F SL G+ ++ L SL+ +++ GFG + VTV S
Sbjct: 102 PHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIKTGFGEGKDLVVTVMS 161
Query: 247 SHSNNNV 227
+ +
Sbjct: 162 AMGEEQI 168
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 577 FFFFFFISNELYC 539
FFFFFF S ++YC
Sbjct: 102 FFFFFFFSGDVYC 114
>08_01_0505 -
4379722-4380795,4380868-4381008,4381099-4381270,
4381944-4382047,4382127-4382259,4384477-4384653,
4385164-4385309,4385536-4385625,4385703-4385915,
4386090-4386182,4386743-4386937,4387018-4387110,
4387924-4388019,4388556-4388985,4389424-4390091,
4392074-4392271,4392690-4393407,4394036-4394181
Length = 1628
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = -1
Query: 430 ASPHNPVLRLHYLNLSREFRSLARGGGDLRNRFTLSMVSSLVSEVRNGFGFAVSVRVTVA 251
AS H P + +N + R L GG + RN+ + S +V N G A + T
Sbjct: 548 ASKHCPDAKYMNVNSDNQIRQLFFGGIENRNKRGETWPQSKTFKVPNDEGIATEGKKTPK 607
Query: 250 SSHSNNNVRLVVVVESL 200
S ++L +VE L
Sbjct: 608 S----RTIKLFTIVEDL 620
>07_03_0762 +
21324550-21325414,21325606-21325746,21325993-21326177,
21326200-21326410,21326526-21326769,21326853-21327003,
21327089-21327439
Length = 715
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -1
Query: 319 VSSLVSEVRNGFGFAVSVRVTVASSHSNNNVRLVVVVESLLQLTSFATYDAVGSLEIVVV 140
V L R G G S + VA + N VRL+ V + Y GSL+IV+
Sbjct: 408 VKRLCQSSRQGIGELKSELILVAKLYHKNLVRLIGVCLEQQEKILVYEYMPNGSLDIVLF 467
Query: 139 SS 134
+S
Sbjct: 468 AS 469
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,273,505
Number of Sequences: 37544
Number of extensions: 275222
Number of successful extensions: 724
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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