Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2484
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0609 + 24312528-24313352                                         31   1.3  
01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330...    30   1.7  
09_02_0060 + 3729613-3729863,3730377-3730392                           29   3.0  
07_01_0307 - 2194796-2199274                                           28   7.0  
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805...    28   7.0  
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     28   9.3  

>02_04_0609 + 24312528-24313352
          Length = 274

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
 Frame = -3

Query: 403 GSIKHTIMLSTSNRNIPLSSTVLVGVIPLNT--------INMDLNSLISKFAVPRVMVTL 248
           G+I  ++  S+S   + LS+ +LVG IP N         +++D N+L          +T 
Sbjct: 137 GAIPVSLTNSSSLSYLDLSTNLLVGAIPANISLLSNLEYLDLDQNNLTGTVLQTIGDITS 196

Query: 247 LDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMSSIDSG 128
           L++L  F +    S ++P K+  +P L++  L  +++  G
Sbjct: 197 LEILYLFQNQL--SGSIPDKIWQLPNLMQLVLGENNLSGG 234


>01_06_1129 +
           34732007-34732091,34732814-34732934,34733012-34733083,
           34733168-34733242,34733348-34733419,34733514-34733675,
           34733780-34733854,34733932-34734003,34734089-34734160,
           34734245-34734313,34734388-34734462,34734557-34734628,
           34734732-34734866,34734946-34735415,34735490-34735648,
           34735741-34735880,34735974-34736193,34736305-34736540,
           34736627-34737130
          Length = 961

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
 Frame = -3

Query: 418 SGPALGSIKH-TIMLSTSNRNIPLSSTV--LVGVIPLNTINMDLNSLISKFAVPRVMVTL 248
           SGP  GSI + + ++  S  +  L+ TV  L     L  +++  N+ +S  A PR   TL
Sbjct: 253 SGPVPGSIANLSRLMELSLASNQLNGTVPDLTSANALTYVDLSNNNFMSSPA-PRWFSTL 311

Query: 247 LDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMSS 140
             +   F D    + T+P  +   P L + SL  +S
Sbjct: 312 TSLTTLFMDSDHLTGTIPSALFSFPQLQQISLAKNS 347


>09_02_0060 + 3729613-3729863,3730377-3730392
          Length = 88

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 78  ANWPPGRYSALRLIVCSRLIPPIRC 4
           A WPP RY + R   C R +P + C
Sbjct: 35  AKWPPSRYRSYR-ATCCRAVPSLLC 58


>07_01_0307 - 2194796-2199274
          Length = 1492

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 429 EVRELRKSNCTLVYTKNEAAQQVLL 503
           E+RELR  N   V+TK EAA+  LL
Sbjct: 798 ELRELRIDNLEKVHTKEEAAEAKLL 822


>04_04_1401 +
           33279092-33279286,33280223-33280306,33280459-33280524,
           33280945-33281028,33281181-33281246,33281719-33281802,
           33281955-33282020,33282323-33282388,33282667-33282726,
           33282805-33282888,33282968-33283111,33283552-33283586,
           33283694-33283746,33283828-33283928,33284516-33284974
          Length = 548

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +3

Query: 21  SDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGT 200
           SD+NK  + KL +   ++ R   GDNK       +K   +D   +  +N +      L  
Sbjct: 202 SDDNKSDSCKLRDKTTSDDRSKSGDNKYDSCKTRDKKPIVDLADEFENNTIKKKITLLSE 261

Query: 201 VYDY 212
            YD+
Sbjct: 262 KYDF 265


>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 412 PALGSIKHTIMLSTSNRNIPLSSTVLVGV 326
           P++ +    I LSTS RNI  S T  +G+
Sbjct: 708 PSMAADSDQIELSTSTRNISFSDTAYIGI 736


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,781,315
Number of Sequences: 37544
Number of extensions: 387499
Number of successful extensions: 960
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)