Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2484
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical p...    31   1.2  
Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U50191-8|AAK31551.3|  296|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z19154-8|CAE17741.1|  335|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical ...    28   6.3  
AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical ...    28   6.3  

>Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +3

Query: 39  LNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVK-----EGSNKVGTNSIFLGTV 203
           LN+ L   +   L     DN +  + + ++    D ++K     +G N    NS F+G +
Sbjct: 145 LNLNLQPTQTYTLESPTNDNVVINVALVDQIGKTDIVIKLIYVYDGPN---VNSRFVGNL 201

Query: 204 YDYGVKSPNAASTSSNVT 257
           YDY V SP    +S N T
Sbjct: 202 YDY-VNSPTLMKSSGNST 218


>Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +3

Query: 39  LNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVK-----EGSNKVGTNSIFLGTV 203
           LN+ L   +   L     DN +  + + ++    D ++K     +G N    NS F+G +
Sbjct: 145 LNLNLQPTQTYTLESPTNDNVVINVALVDQIGKTDIVIKLIYVYDGPN---VNSRFVGNL 201

Query: 204 YDYGVKSPNAASTSSNVT 257
           YDY V SP    +S N T
Sbjct: 202 YDY-VNSPTLMKSSGNST 218


>U50191-8|AAK31551.3|  296|Caenorhabditis elegans Hypothetical
           protein T14B4.3 protein.
          Length = 296

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = -2

Query: 458 AVGFAQFAHLSFGQRPRVGVDQAHNHAVDFESQHTIVFYSFSGRYTFEYNKHGFKFLD 285
           +V    F   +FG    VG  QA      F+    ++     G   F+Y+ H F F D
Sbjct: 38  SVSLLNFNKNAFGLGAAVGAHQAIGDEKLFQKPKALLIIVIDGLENFDYDGHAFNFTD 95


>Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical
           protein C47E8.3 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -3

Query: 205 YTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLN-LLSPCAMRKLATRALFSFTFNRLF 29
           Y + + + +  T+ E ++  SS++ GF  +Y +LN ++S   +     R    F  NRL 
Sbjct: 275 YLLSQSLQVFLTVWE-TINRSSLEDGFPTMYSYLNDIVSIFTLLASCLRFPIYFCCNRLI 333

Query: 28  SSDSTDSL 5
            + S D+L
Sbjct: 334 HTASVDTL 341


>Z19154-8|CAE17741.1|  335|Caenorhabditis elegans Hypothetical
           protein C40H1.9 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 433 CANCANPTALWCTRKTRQLSKFY---WKITLPLLMLTKPPI 546
           C+NC     +WC  +++  S F     KI+L L   TKP +
Sbjct: 25  CSNCVGSGQVWCVEQSQCNSSFVSCSTKISLQLNCPTKPKV 65


>AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical
           protein Y73F8A.9 protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 474 SCTPECSWICAIRAPLVRTAAPRWGRSSTQSC 379
           SC P C   C   AP+     P+  +  TQ C
Sbjct: 131 SCMPACEQSCVAPAPVTVQCVPQCQQKCTQQC 162


>AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical
           protein Y73F8A.8 protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 474 SCTPECSWICAIRAPLVRTAAPRWGRSSTQSC 379
           SC P C   C   AP+     P+  +  TQ C
Sbjct: 132 SCMPACEQSCVAPAPVTVQCVPQCQQKCTQQC 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,653,000
Number of Sequences: 27780
Number of extensions: 356481
Number of successful extensions: 968
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)