Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2481
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    29   0.50 
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    28   1.2  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   6.2  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
 Frame = +3

Query: 168 VSPAPSGFAFPDQRRE--RKLEPVITPPVLPVLEH-----LERDPSTLLPHEKRAQVKPK 326
           V+P P   +  D R    RK+ P   P + P L+          PS +LP     +V PK
Sbjct: 433 VNPEPHSESISDTRPSTPRKVPPSTVPKMNPKLQGGNSVTAPSTPSKVLP-AMSPKVAPK 491

Query: 327 FGGGGFNLAPS 359
           F GG  + APS
Sbjct: 492 FQGGRSSTAPS 502


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 183 SGFAFPDQRRERKLEPVITPPVLPVLEHLERDPSTLLPHEKRAQVKPK-FGGGGFNLAPS 359
           S F    Q   +++  ++T P+      ++ D    LP  K  ++  K FG GG+ LAP 
Sbjct: 100 SFFGLSSQPFSKEICDLLTAPLEVDDIEIKPDGILYLPEIKYRRILNKAFGPGGWGLAPR 159

Query: 360 GN 365
           GN
Sbjct: 160 GN 161


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 405 VRYRCC*YWRSVHHCLKEPD 346
           VRYRCC     V +C+KE D
Sbjct: 96  VRYRCCQIIARVVNCVKEID 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,675
Number of Sequences: 5004
Number of extensions: 44379
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)