Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2481
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0207 + 13017538-13017670,13019486-13019658,13020754-130208...    30   1.6  
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993...    29   4.9  
12_01_0602 + 4923191-4923622                                           28   6.4  
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366...    28   6.4  
01_01_0082 + 625198-625719                                             28   6.4  
03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009     28   8.5  

>06_02_0207 +
           13017538-13017670,13019486-13019658,13020754-13020845,
           13022213-13022271,13022659-13022759,13023907-13023988,
           13024092-13024321
          Length = 289

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +2

Query: 95  RHSIIRSNHEAPVLLSLLGDDFKNRFARALRLRFSGSASRKEIRTSDNTSRLACFRTLRA 274
           R + +      P+ L+ L     +RF RALRL FS +AS   +  + N   L C R + +
Sbjct: 75  RSAAVAPGRSYPLFLASLPVASSSRFTRALRL-FSANASINYVLIATNCRCLCCNRAIHS 133


>02_01_0015 -
           98311-98412,98635-98707,98830-98921,99139-99230,
           99363-99432,99683-99781,100008-100093,100541-100655,
           100853-100918,101064-101143,101226-101301,101915-102151,
           102559-102590,102993-103047,103384-103498,104497-104579,
           105182-105232,105740-105802,105945-106010,106144-106279,
           106503-106591,106844-106964,107138-107340,107434-107820
          Length = 862

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 170 FARALRLRFSGSASRKEIRTSDNTSRLACFRTLRA 274
           FA A  L FSG   R    T+ N++R  C  T+RA
Sbjct: 243 FADAEALLFSGMLKRTTAATNANSNRSQCIITIRA 277


>12_01_0602 + 4923191-4923622
          Length = 143

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 568 PVHQSQEPPRKPHPSEQASEITSEARARRQPFGIQFTWVGFAQPNPSFG 714
           P  Q+  P   P P  +A ++      RR+   I     GF  P+P+ G
Sbjct: 3   PFQQNVSPALPPKPKRRAGKVILMDLERRRSASINKLSDGFMSPDPNLG 51


>05_07_0212 +
           28434612-28435931,28436012-28436044,28436557-28436670,
           28436767-28437102,28437221-28437283,28437364-28437519,
           28437650-28437715,28439074-28439310,28439403-28439678,
           28440060-28440248,28440459-28440620
          Length = 983

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 195 FPDQRRERKLEPVITPPVLPVLEHLERDPSTLLPHEKRAQVKPKFGGG 338
           F D+    KLE    PP++ ++ H++   +TLL + ++++V     GG
Sbjct: 414 FLDEEDLDKLED--RPPIVTIMGHVDHGKTTLLDYIRKSKVVASEAGG 459


>01_01_0082 + 625198-625719
          Length = 173

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
 Frame = +3

Query: 228 PVITPPVLPVLEHLERDPSTLLPHEKRAQVK---PKFGGGGFNLAPSGN 365
           PV  PP  PV       P    P           P +GGGG+N  PS N
Sbjct: 62  PVYYPPPPPVYYPPPSPPPVAYPPPTTPSTNCPPPPYGGGGYNPTPSYN 110


>03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009
          Length = 768

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 613 EQASEITSEARARRQPFGIQFTWVGFAQPNP 705
           E A  + +E R +R+ + +  TWVGF Q  P
Sbjct: 700 ETALHLIAECRYKRRIWNLVATWVGFHQLEP 730


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,172,672
Number of Sequences: 37544
Number of extensions: 371139
Number of successful extensions: 1354
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)