Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2478
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   2.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   3.4  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   3.4  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   4.5  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   4.5  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   4.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   7.9  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    24   7.9  

>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 254 PSVPNHFRPISILPFLSKVLE 316
           P+V  H+RPI+I   + K+L+
Sbjct: 819 PTVSRHYRPITIFEAIRKILK 839


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 104 YDNICRRMIITILDCLLPAIY--HIFNFSLDSGEFPFLWRRAYVRALPKIPDPS 259
           Y+  C   + T+LD    ++   H+  F+L  GE     + A ++ +PK+PD S
Sbjct: 800 YEGFCMSFL-TLLDHTSESLLYNHVVRFTL--GELNRDQQNAILKQIPKVPDHS 850


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
 Frame = +2

Query: 59  EIRKVILSIKSNAVGYDNICRRMIITILDCLLPA------------IYHIFNFSLDSGE 199
           E R  I  +    +    +C R+  T++DC+               IYH+F+F+ + G+
Sbjct: 796 ECRSSITRVYKEFIRLSKLCMRISSTVVDCVSAVREACSGVNCHDLIYHVFSFAAEFGQ 854


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +2

Query: 20  RVVPFQLFPVAPSEIRKVILSIKSNAVGYDNICRRMIITILDCLLPAI 163
           R++P Q +    SE    +++I S A G + + ++ +  +LD +LP +
Sbjct: 378 RLIPSQKW----SERHAALMAISSIAEGAEKLMKKELSRVLDMVLPLL 421


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 158 AIYHIFNFSLDSGEFPFLWRRAYVRALPKIPDPSVPNHFRPISIL 292
           A+  I N +L S    F   ++ V+ALP +  PS P+H    S L
Sbjct: 371 ALPKITNSNLISPNQTFNPVKSSVKALPTLEPPSSPSHATATSSL 415


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +2

Query: 47  VAPSEIRKVILSIKSNAVGYDNICRRMIITILDCLLPAI 163
           + P+  +  ILS ++N   Y N+C  +  ++++  LP++
Sbjct: 499 IKPNTYKNTILSNENNTPNYSNVC--LSTSLINRSLPSL 535


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = +2

Query: 5    WPKASRVVPFQLFPVAPSEIRKVILSIKSNAVGYDNICRRMIITILDCLLPAIYHIFNFS 184
            W K  +   F+       ++  V LS   + +  +NIC+++  T L   L A   + +  
Sbjct: 977  WKKYLKDFKFKSLSYQREKMGVVELSSNISLLSVENICKQLQTTPLSFFLTAWSTVLSSY 1036

Query: 185  LDSGEF 202
            L + +F
Sbjct: 1037 LKTNDF 1042


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 235 GTNISSAP*ERKLSRVKREVKNM 167
           GT ISS P ER+      E+KN+
Sbjct: 87  GTQISSTPAEREYYSKSDEIKNI 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,456,330
Number of Sequences: 5004
Number of extensions: 26480
Number of successful extensions: 72
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)