Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2478
         (354 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0119 - 908600-909592,909685-909885                               30   0.60 
01_06_0887 + 32733300-32734565                                         29   1.1  
01_01_0755 - 5827893-5829764                                           27   3.2  
11_06_0210 + 21296782-21296909,21297135-21298844,21299127-212994...    27   4.2  
10_07_0004 - 11722867-11723532,11724778-11724825                       27   5.6  
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697...    26   7.4  
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464...    26   9.8  
03_06_0062 + 31384440-31384619,31384788-31384957,31385143-31385992     26   9.8  
01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496     26   9.8  

>07_01_0119 - 908600-909592,909685-909885
          Length = 397

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = +2

Query: 179 FSLDSGEFPFLWR------RAYVRALPKIPDPSVPNHFRPISILPFLSKVLEGGP 325
           F L+    P LWR      RA  RA P +  PS+PN F P   L F+  +  GGP
Sbjct: 260 FRLEVRGAPRLWRAAARATRAADRAAPWLGIPSIPNLFEPFG-LHFVYGLGGGGP 313


>01_06_0887 + 32733300-32734565
          Length = 421

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 212 WRRAYVRALPKIPDPSVPNHFRPISILPFLSKVLEGG 322
           WR +  R  P  P P +P    P++  P  S VL GG
Sbjct: 38  WRESLERLPPLHPPPKLPYLILPLAEQPAFSCVLSGG 74


>01_01_0755 - 5827893-5829764
          Length = 623

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 23/77 (29%), Positives = 37/77 (48%)
 Frame = +2

Query: 89  SNAVGYDNICRRMIITILDCLLPAIYHIFNFSLDSGEFPFLWRRAYVRALPKIPDPSVPN 268
           SN  G +   R +++ + D ++ AI+  F      G  P LWR      +  I   ++P 
Sbjct: 294 SNVPG-NGAFREVVVKVNDDIVGAIWP-FTVIYTGGVNPLLWR-----PITGIGSFNLPT 346

Query: 269 HFRPISILPFLSKVLEG 319
           +   I I PFL K+L+G
Sbjct: 347 Y--DIDITPFLGKLLDG 361


>11_06_0210 +
           21296782-21296909,21297135-21298844,21299127-21299418,
           21300210-21300519,21300890-21301110
          Length = 886

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 227 VRALPKIPDPSVPNHFRPISILPFLSKVLE 316
           + +L K+P+P V  HF+P   +  L+++ E
Sbjct: 43  IESLMKMPEPVVLPHFKPADYVDILAQIHE 72


>10_07_0004 - 11722867-11723532,11724778-11724825
          Length = 237

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 203 PFLWRRAYVRALPKIPDPSVPNHFRPISILPFLSKVLEGGPGTQFA 340
           PF W  A+ +A   +P+ +VP  +    +LPF  +  +     QFA
Sbjct: 5   PFGWLLAFAKA-KGLPEKTVPQEYCYTRLLPFPQRSRKPSVDEQFA 49


>02_02_0119 +
           6978697-6979045,6979519-6979581,6979757-6979866,
           6979969-6980154,6980266-6980361,6980493-6980564,
           6980798-6980909,6982448-6982534,6982680-6983872
          Length = 755

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 77  LSIKSNAVGYDNICRRMIITILDCLL 154
           L   S+A G  ++C  MI+TI+ CLL
Sbjct: 108 LGFSSSAGGARSVCVIMIVTIILCLL 133


>08_02_0502 +
           17844775-17845092,17845528-17845634,17846039-17846492,
           17846623-17846694,17846804-17846925,17847079-17847294,
           17847392-17847500,17847618-17847730,17847916-17848063,
           17848274-17848396
          Length = 593

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 97  RIRFNGKYHFSYLRGGNWK 41
           R+R +GKY++ ++ GG W+
Sbjct: 499 RLR-HGKYYYKFIAGGQWR 516


>03_06_0062 + 31384440-31384619,31384788-31384957,31385143-31385992
          Length = 399

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 230 RALPKIPDPSVPNHFRPISILPFLSKVLEGGPGT 331
           RA P +  PS+PN F P   L FL  V   GP +
Sbjct: 285 RAAPWLKIPSIPNLFAPFG-LYFLYGVGGAGPAS 317


>01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496
          Length = 428

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 291 YPSYPKCSRGGPVPNSPYSE 350
           + + P C   GP+PN P+ +
Sbjct: 210 HENLPSCRSSGPIPNFPFQQ 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,226,248
Number of Sequences: 37544
Number of extensions: 198033
Number of successful extensions: 494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)