Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2478
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    50   5e-07
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    42   1e-04
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    42   1e-04
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    38   0.002
U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane r...    32   0.10 
AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell...    32   0.10 
AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell...    32   0.10 
AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical ...    30   0.53 
Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical pr...    28   1.6  
AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical ...    27   3.8  
U41746-1|AAA83330.3|  347|Caenorhabditis elegans Seven tm recept...    27   5.0  
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    27   5.0  
U58743-4|AAB00617.1|  177|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical ...    26   8.7  
AF106584-6|AAC78220.1|  424|Caenorhabditis elegans Hypothetical ...    26   8.7  
AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 50.0 bits (114), Expect = 5e-07
 Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
 Frame = +2

Query: 11  KASRVVPFQLFPVAPSEIRKVILSIK-SNAVGYDNICRRMIITILDCLLPAIYHIFNFSL 187
           + S++ P Q   +   E+  + + +  S A+G D I +  I  +  C    + +++N SL
Sbjct: 317 RISKIAPLQ-DRITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSL 375

Query: 188 DSGEFPFLWRRAYVRALPK-IPDPSVPNHFRPISILPFLSKVLE 316
            +   P  W++A V  +PK   DP++ + +RPIS+L  ++K+LE
Sbjct: 376 STNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLE 419


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +2

Query: 44  PVAPSEIRKVILSIKSN-AVGYDNICRRMIITILDCLLPAIYHIFNFSLDSGEFPFLWRR 220
           P  P EIR V+ S  +  A G D I    + +  D ++  I   FN  L S   P  W+ 
Sbjct: 546 PFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKT 605

Query: 221 AYVRALPKIPDPSVPNHFRPISILPFLSKV 310
           +    + K  D     ++RPI +LP L KV
Sbjct: 606 SKTTLIFKKGDRENLENYRPICLLPVLYKV 635


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +2

Query: 44  PVAPSEIRKVILSIKSN-AVGYDNICRRMIITILDCLLPAIYHIFNFSLDSGEFPFLWRR 220
           P  P EIR V+ S  +  A G D I    + +  D ++  I   FN  L S   P  W+ 
Sbjct: 285 PFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKT 344

Query: 221 AYVRALPKIPDPSVPNHFRPISILPFLSKV 310
           +    + K  D     ++RPI +LP L KV
Sbjct: 345 SKTTLIFKKGDRENLENYRPICLLPVLYKV 374


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = +2

Query: 44  PVAPSEIRKVILSIKSN-AVGYDNICRRMIITILDCLLPAIYHIFNFSLDSGEFPFLWRR 220
           P  P +IR  + S  +  A G D I    + +  D ++  I   FN  L S   P  W+ 
Sbjct: 375 PFLPEKIRYALRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKT 434

Query: 221 AYVRALPKIPDPSVPNHFRPISILPFLSKV 310
           +    + K  D     ++RPI +LP L KV
Sbjct: 435 SKTTLIFKKGDRENLENYRPICLLPVLYKV 464


>U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane
           receptor protein.
          Length = 525

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 92  NAVGYDNICRRMIITILDCLLPAIYHIFNFSLDSGEFPFLWRRAYVRALPKIPDPSVPNH 271
           NAV        ++++ + C    IY +F  +  S +     +  Y  A+PK+P P++P  
Sbjct: 453 NAVSATKFSFDLLLSFIMCAFCLIYLLFKLTRSSSKVS---KEGYQPAVPKLPQPAIPGS 509

Query: 272 FR 277
            R
Sbjct: 510 VR 511


>AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform b protein.
          Length = 529

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 92  NAVGYDNICRRMIITILDCLLPAIYHIFNFSLDSGEFPFLWRRAYVRALPKIPDPSVPNH 271
           NAV        ++++ + C    IY +F  +  S +     +  Y  A+PK+P P++P  
Sbjct: 457 NAVSATKFSFDLLLSFIMCAFCLIYLLFKLTRSSSKVS---KEGYQPAVPKLPQPAIPGS 513

Query: 272 FR 277
            R
Sbjct: 514 VR 515


>AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform a protein.
          Length = 525

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 92  NAVGYDNICRRMIITILDCLLPAIYHIFNFSLDSGEFPFLWRRAYVRALPKIPDPSVPNH 271
           NAV        ++++ + C    IY +F  +  S +     +  Y  A+PK+P P++P  
Sbjct: 453 NAVSATKFSFDLLLSFIMCAFCLIYLLFKLTRSSSKVS---KEGYQPAVPKLPQPAIPGS 509

Query: 272 FR 277
            R
Sbjct: 510 VR 511


>AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical
           protein F54E2.5 protein.
          Length = 710

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +2

Query: 26  VPFQLFPVAPSEIRKVILSIKSNAVG---YDNICRRMIITILDCLLPAIYHIFNFSLDSG 196
           VP  L  ++   ++  I S  S+ +    Y  +   ++I I  C  PA++ + N  L+  
Sbjct: 463 VPATLSLISKDSVQSEIFSFISHLIDFCHYSILFSNLVIAIHPCQFPAVFLVLNIFLNFS 522

Query: 197 EFPFLW 214
              ++W
Sbjct: 523 SIIYIW 528


>Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical
           protein F59F3.1 protein.
          Length = 1227

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 130 NHAATYVVISHRIRFNGKYHFSYLRGGNW 44
           N  ATY++       +  YHFS+ +G  W
Sbjct: 211 NQTATYIITEKEASSDDGYHFSWEKGFQW 239


>AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical
           protein B0524.2 protein.
          Length = 379

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 131 ITILDCLLPAIYHIFNFSLDSGEFPFLWRRAYV 229
           I ++DCL+ + YH    S  +G+ P L   AY+
Sbjct: 254 IDLIDCLMASCYHPMYSSGLNGKAPILRGEAYI 286


>U41746-1|AAA83330.3|  347|Caenorhabditis elegans Seven tm receptor
           protein 177 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 104 YDNICRRMIITILDCLLPAIYHIFNFSLDSGEFPFLWRRAYVRALPK 244
           +++I  R I +ILDCL+ A+Y +   S++     FL+R  Y    PK
Sbjct: 82  HNSIFSREICSILDCLMCAMYGV---SMNVFALHFLYR--YATLFPK 123


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +2

Query: 8   PKASRVVPFQLFPVAP---SEIRKVILSIKSN-AVGYDNICRRMIITILDCLLPAIYHIF 175
           P+     P    P+ P    EIR  I S  +  A G D I    + +  D ++  I   F
Sbjct: 380 PQLPTPPPIMAEPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRF 439

Query: 176 NFSLDSGEFPFLWR 217
           N  L+SG  P  W+
Sbjct: 440 NRYLESGNIPKDWK 453


>U58743-4|AAB00617.1|  177|Caenorhabditis elegans Hypothetical
           protein F39F10.5 protein.
          Length = 177

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/33 (24%), Positives = 23/33 (69%)
 Frame = +2

Query: 47  VAPSEIRKVILSIKSNAVGYDNICRRMIITILD 145
           + PS+   ++ S+++  +GY  + +++I+TI++
Sbjct: 145 ILPSKFGLLVKSVENFNIGYVTVAKKIILTIIN 177


>AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical
           protein Y106G6H.7 protein.
          Length = 893

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 224 YVRALPKIPDPSVPN 268
           Y R  PK PDPS+PN
Sbjct: 542 YDRMTPKNPDPSLPN 556


>AF106584-6|AAC78220.1|  424|Caenorhabditis elegans Hypothetical
           protein F54A5.1 protein.
          Length = 424

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 245 IPDPSVPNHFRPISILPF 298
           +P P++P HF P  + PF
Sbjct: 396 VPFPTLPTHFFPFQMAPF 413


>AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical
           protein R11G11.12 protein.
          Length = 441

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 348 HYRANWVPGPPSSTLDR 298
           H+ ANW+ G PS+ L+R
Sbjct: 250 HFDANWLSGYPSAELNR 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,121,403
Number of Sequences: 27780
Number of extensions: 148919
Number of successful extensions: 349
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)