Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2478
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   0.46 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   1.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   2.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   5.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   5.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   7.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   9.9  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.2 bits (50), Expect = 0.46
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 260 QKGQEF*VGHEHKLCAI-GKETLQSQERS*KYDKLQVGD 147
           +KG+     H+ KLCA+ G E L+ ++    +DK + GD
Sbjct: 17  RKGKNASQAHK-KLCAVYGDEALKERQCQNWFDKFRSGD 54


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 294 PSYPKCSRGGPVPNSPYS 347
           PSYP      P P+SP S
Sbjct: 81  PSYPGGGSSSPSPSSPSS 98


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 44  PVAPSEIRKVILSIKSNAVGYDNICRRMIITILDCLLPAIYHIFN 178
           P+   E+   +  + S+ V +  IC R+    +  +L A+Y +F+
Sbjct: 413 PIDTCEMFDSVSILFSDVVTFTEICSRITPMEVVSMLNAMYSLFD 457


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 96  ALDLMESITFLISEG 52
           ALD++E I +L S+G
Sbjct: 703 ALDVLEGIRYLHSQG 717


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 96  ALDLMESITFLISEG 52
           ALD++E I +L S+G
Sbjct: 741 ALDVLEGIRYLHSQG 755


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 227 VRALPKIPDPSVPNHF 274
           +RA+ K+PD S+   F
Sbjct: 226 IRAVTKLPDTSMAKSF 241


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 347 TIGRIGYRAPPRALW 303
           +I  +    PPRALW
Sbjct: 567 SINTVAEWEPPRALW 581


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,662
Number of Sequences: 438
Number of extensions: 2086
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)