Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2476
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82284-2|CAB05290.1|  402|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z69646-6|CAD44142.1|  287|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z69646-5|CAA93474.1|  288|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U40801-6|AAO91729.1|  450|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical ...    28   7.0  

>Z82284-2|CAB05290.1|  402|Caenorhabditis elegans Hypothetical
           protein T27E7.3 protein.
          Length = 402

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 269 TIINHILSTISHHIFKSYCTQITCILIFLF 180
           TIINH    I++H  K     + CI+I +F
Sbjct: 117 TIINHAHHVITNHFVKVIAGAVACIVIIIF 146


>Z69646-6|CAD44142.1|  287|Caenorhabditis elegans Hypothetical
           protein F57C7.3b protein.
          Length = 287

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -3

Query: 410 TCTVRPK*AYTKTRFPTAS*KTASVSTPPIVLTSVKGNERVLLPIHNTIINHILSTISHH 231
           T T RP    T T  P ++        PP+V +++        P H T+ N   + I+  
Sbjct: 178 TTTYRPIVVAT-TSTPRSAATNPPRQQPPMVTSTISSGP--FSPFHETLANGFYAAIAGG 234

Query: 230 IFKSYCTQITCILIFLFR 177
           +  +  T I  +L  +FR
Sbjct: 235 VLVAVITAILLVLFVVFR 252


>Z69646-5|CAA93474.1|  288|Caenorhabditis elegans Hypothetical
           protein F57C7.3a protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -3

Query: 410 TCTVRPK*AYTKTRFPTAS*KTASVSTPPIVLTSVKGNERVLLPIHNTIINHILSTISHH 231
           T T RP    T T  P ++        PP+V +++        P H T+ N   + I+  
Sbjct: 179 TTTYRPIVVAT-TSTPRSAATNPPRQQPPMVTSTISSGP--FSPFHETLANGFYAAIAGG 235

Query: 230 IFKSYCTQITCILIFLFR 177
           +  +  T I  +L  +FR
Sbjct: 236 VLVAVITAILLVLFVVFR 253


>U40801-6|AAO91729.1|  450|Caenorhabditis elegans Hypothetical
           protein F28E10.1d protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 393 QMSIYQDTFSHSELEDCISKH 331
           Q  +  DTFSHS   DCIS H
Sbjct: 320 QPMLVGDTFSHSSSIDCISAH 340


>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical protein
            F28E10.1a protein.
          Length = 1134

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 393  QMSIYQDTFSHSELEDCISKH 331
            Q  +  DTFSHS   DCIS H
Sbjct: 1004 QPMLVGDTFSHSSSIDCISAH 1024


>AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical
           protein Y5H2B.4 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 307 SRAMNACFYRY-TTQLLIIYFPLLVITFLKVIAL 209
           S ++N CFY+Y TT   I+Y    ++TFL  I L
Sbjct: 164 SCSLNLCFYQYWTTYKTIVY----ILTFLSTIVL 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,158
Number of Sequences: 27780
Number of extensions: 271093
Number of successful extensions: 587
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)