Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2474
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    27   2.8  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    26   3.7  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    26   4.9  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   8.6  
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    25   8.6  

>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 218 TSDKHSWDEQVSLLFCGCLLSIFIHL 141
           TSD   W   V L +CGCL    +HL
Sbjct: 353 TSDHSIWSWGVELRYCGCLGLGSLHL 378


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 257 NISTDCSAKVLIPTSDKHSWDEQV 186
           NI  DC   VLIP  +   W E+V
Sbjct: 82  NIKIDCQQGVLIPRWETEEWVERV 105


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 248 TDCSAKVLIPTSDKHSWDEQVSLL 177
           TD S K++I  S +HS D + SLL
Sbjct: 320 TDPSTKIIIDDSIRHSDDPETSLL 343


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -1

Query: 609 YPGGTPQEVLPPVKTNVTPFFIPETLSNQGRPN 511
           +P GT   +LPP      PF IP        PN
Sbjct: 358 HPEGTMTNLLPPNMEMPQPFEIPVIAKTSALPN 390


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 118 SRTPAPYNKCINIDNKHPQKSKETCSSQECLSDVGI 225
           SR P P NK  N+ +     S  T SS+   S +G+
Sbjct: 404 SRRPKPKNKPSNVTSTTSYTSGMTSSSESGSSKIGV 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,792
Number of Sequences: 5004
Number of extensions: 53365
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)