Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2474
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388...    29   2.9  
04_04_0839 - 28565732-28565908,28566380-28566544,28566656-285667...    29   2.9  
12_01_0800 - 7331444-7331539,7331617-7331742,7331830-7331907,733...    29   3.8  
10_06_0099 - 10677024-10677073,10677894-10677998,10678254-106783...    28   5.1  

>09_04_0515 +
           18238434-18238545,18238659-18238709,18238844-18238897,
           18239727-18239777,18239845-18239895,18240056-18240210,
           18240550-18240663,18240873-18240938,18241478-18241561,
           18241640-18241726,18241975-18242066,18242163-18242223,
           18242475-18242531,18243129-18243220,18243394-18243584,
           18244203-18244321,18244518-18244589,18244699-18244784,
           18244866-18244962,18245488-18245622
          Length = 608

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 184 ETCSSQECLSDVGIKTLALQSVLILHH*VSQVSLEISIV 300
           E+     CLSD G   L+   +L+L H  S V L +S+V
Sbjct: 372 ESAGKFPCLSDSGTSHLSKHLILMLRHEESIVGLVVSVV 410


>04_04_0839 -
           28565732-28565908,28566380-28566544,28566656-28566788,
           28566888-28567007,28568361-28568740
          Length = 324

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 539 KPYPTKEDQTNPPPVVILSAGDT--IYRVLAPEDRNCCV 429
           +P     D+T P   ++   G    I +VLAPED  CC+
Sbjct: 232 EPEKQTADETGPFGGIMTECGTNQPIEKVLAPEDAECCI 270


>12_01_0800 -
           7331444-7331539,7331617-7331742,7331830-7331907,
           7332515-7332747,7332832-7332871,7333016-7333070,
           7333158-7333345,7333416-7333475,7333686-7333769,
           7334817-7334903,7335178-7335246,7335354-7335410
          Length = 390

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 612 TYPGGTPQEVLPPVKTNV-TPFFIPETLSNQGRPNKPPPG 496
           T     PQE  PP  ++  TP   P+  + QG P  PP G
Sbjct: 12  TSKASAPQEQQPPASSSTATPAVYPDWANFQGYPPIPPHG 51


>10_06_0099 - 10677024-10677073,10677894-10677998,10678254-10678315,
            10678694-10679197,10679695-10680356,10680695-10680793,
            10680881-10681110,10681227-10681278,10681391-10681577,
            10681661-10681873,10682006-10682175,10683455-10683730,
            10684188-10684643,10685527-10685766,10687517-10687771
          Length = 1186

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 287  SRLT*LTQWCNISTDCSAKVLIPTSDKHSWDEQVSLLFCGCLLSI 153
            S L+ L + CN S   S  +++   DK +W E   L F  CL+ +
Sbjct: 935  SALSALLESCNSSVKSSLNMVLV--DKEAWGEDSGLAFFRCLIDL 977


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,548,270
Number of Sequences: 37544
Number of extensions: 343849
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)