Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2474
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81069-3|CAB02989.1|  352|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AC024830-1|AAF59605.1|  256|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 606 PGGTPQEVLPPVKTNVTPFFIPETLSNQGRPNKPPP 499
           P G P  +LP + TN  P   P    N   PN PPP
Sbjct: 472 PPGPPSSLLPLINTNAPP-PPPMPSINGHAPNPPPP 506


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 112 YLSRTPAPYNKCINIDNKHPQKSKETCSSQECLSDVG 222
           Y S TP+  N   +  + +   S +TCS+ +C+S +G
Sbjct: 18  YYSSTPSYSNSYRSCSSSYECSSGQTCSNGQCMSSLG 54


>Z81069-3|CAB02989.1|  352|Caenorhabditis elegans Hypothetical
           protein F25H9.3 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 233 WRYSQYLYCTTESVKSVLKSVLWPISFPIEYCFVHFY 343
           + YS Y  CTT++       + +PIS P   C+   Y
Sbjct: 182 FHYSTYCKCTTKNCNDPEAPIPYPISSPTVSCYTSGY 218


>AC024830-1|AAF59605.1|  256|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.5 protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 579 PPVKTNVTPFFIPETLSNQGRPNKPPPGSNFKC 481
           P  + N   F IP   S  GRP K    S+FKC
Sbjct: 20  PKDENNELEFGIPTKRSRSGRPKKICAFSSFKC 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,180,134
Number of Sequences: 27780
Number of extensions: 309477
Number of successful extensions: 829
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)