Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2470
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    29   0.68 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   1.2  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   6.4  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   6.4  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    26   6.4  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    25   8.4  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    25   8.4  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    25   8.4  

>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
 Frame = +1

Query: 298 YSVCYGHCTSIDKSAFIAINTFEDYLLC-----KGTVKNNICSKRSYEEIGTLKFKSQE 459
           Y  C GHC+    +AF  + T   YL+        T K N   K   +     K  S E
Sbjct: 230 YKACMGHCSGHPLAAFCGLATISSYLVLFIVFYHNTYKKNAALKMKAKAAAATKGNSSE 288


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 517  EENHNTQNEVKTIKDHDKKTDSVKSEIPSPKYNSVTNNK-SLDKKSNGKSNGN 672
            E NH T N+ K  +  + K  + + +I S + NS  NN  S   +SNG + GN
Sbjct: 1500 EANHRTSNDNKRDEVTEGKDKNKRQDI-SGESNSRQNNAISRAGRSNGSNRGN 1551


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 552 SFHFILCIVIFFFNTVFRIFLYGVFQIF 469
           S  F+L  V F +N+ F   +YG + +F
Sbjct: 149 SLRFVLHFVSFLYNSSFISHIYGNYDVF 176


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 732  NLSWLISILTFGVFDKNPHYIPIRLSITFFIKRFIVS 622
            +L+WL  +  F  + ++   + IR S +  IKRFI S
Sbjct: 1350 DLAWLPVLYNFFFYVQDAEELAIRASASLGIKRFIES 1386


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 468 EKSEKLHKERFEKQY*RRKSQYTE 539
           EK E+L KE++EK+  +  SQ+ +
Sbjct: 109 EKQEQLQKEKYEKENPKVSSQFAD 132


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 346 IAINTFEDYLLCKGTVKNNIC---SKRSYEEIGTLKFKSQEV 462
           +AIN F DYLL   +    +     +  Y+ + TL+    EV
Sbjct: 287 VAINPFNDYLLATASADKTVALWDLRNPYQRLHTLEGHEDEV 328


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 520 ENHNTQNEVKTIKDHDKKTDSVKSEIPSPKYNSVTNNKSLDKKSN 654
           + +   N  +T++   + T S  SE+P  KY  +  + S  + S+
Sbjct: 97  QKNRAANLQRTLQPPKRPTPSAASEVPKKKYKKIKVDPSARRTSS 141


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 517 EENHNTQNEVKTIKDHDKKTDSVKSEIPSPKYNSVTNNKSLDKKSNGKSN 666
           +E H+ +NE K     +KK   +K +        V    S D K+ G ++
Sbjct: 202 KEIHSEENETKDEIKSEKKEPEIKKQEGGSSTEKVGQPSSSDDKAKGSTS 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,569
Number of Sequences: 5004
Number of extensions: 51185
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)