Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2470
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1792 + 29569623-29569737,29569848-29569981,29570117-295702...    29   5.0  
03_05_0684 - 26720262-26720464,26721118-26721181,26721269-267215...    29   5.0  
01_01_0913 + 7196233-7196389,7196895-7196978,7198064-7198153,719...    29   5.0  
11_06_0762 + 27043460-27044319,27052096-27052912,27052992-270536...    28   8.8  

>07_03_1792 +
           29569623-29569737,29569848-29569981,29570117-29570284,
           29572817-29573003,29573098-29573422,29573591-29574368,
           29574897-29575022
          Length = 610

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 562 HDKKTDSVKSEIPSPKYNSVTNNKSLDKK--SNGKSNGNIMGIFIKN 696
           HD  ++++K++     YN  +N+ +   K  SNG SN N MG   KN
Sbjct: 331 HDNSSEAMKTD---SAYNMKSNSDAAPIKQGSNGSSNNNDMGSTTKN 374


>03_05_0684 -
           26720262-26720464,26721118-26721181,26721269-26721507,
           26722486-26722575,26723678-26723761,26724278-26724434
          Length = 278

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 568 KKTDSVKS-EIPSPKYNSVTNNKSLDKKSNGKSNGNIMGIFIKNTKC 705
           KK DS K    P P  N  TNN  LD  S G  NG ++ +     +C
Sbjct: 103 KKKDSKKKVAAPHPTANVSTNNSLLDPFSTG--NGTVLSVQKHEPEC 147


>01_01_0913 +
           7196233-7196389,7196895-7196978,7198064-7198153,
           7199464-7199699,7199787-7199850,7200505-7200643,
           7201836-7202022,7202555-7202661,7202985-7203073,
           7203432-7203469,7204135-7204152
          Length = 402

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 568 KKTDSVKS-EIPSPKYNSVTNNKSLDKKSNGKSNGNIMGIFIKNTKC 705
           KK DS K    P P  N  TNN  LD  S G  NG ++ +     +C
Sbjct: 103 KKKDSKKKVAAPHPTANVSTNNSLLDPFSTG--NGTVLSVQKHEPEC 147


>11_06_0762 +
           27043460-27044319,27052096-27052912,27052992-27053649,
           27053698-27053934,27054091-27054161,27054346-27054441
          Length = 912

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -2

Query: 720 LISILTFGVFDKNPHYIPIRLSITFFIKRFIVSNRIVLW*W 598
           +I IL+   +D  PH     L ++ F + +++    ++W W
Sbjct: 417 MIRILSLSYYDLPPHLRTCLLYLSIFPEDYLIKKDFLIWRW 457


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,537,220
Number of Sequences: 37544
Number of extensions: 242431
Number of successful extensions: 506
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)