Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2469
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0806 + 27846204-27846497,27847309-27847683 51 1e-06
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314 45 5e-05
03_01_0073 + 599626-599856,599960-600041,600646-600689,601303-60... 42 6e-04
11_06_0081 + 19886848-19888050,19888243-19888896 36 0.022
03_02_0352 + 7749902-7751788,7752547-7752615 35 0.052
02_01_0692 + 5179778-5181847 33 0.28
01_06_0658 - 30942890-30943054,30943159-30943266,30943448-309435... 31 0.64
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 31 0.84
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 30 1.5
04_01_0198 + 2357337-2357339,2357729-2357748,2358324-2358810,235... 29 2.6
03_01_0239 + 1859446-1860112,1861218-1861338,1861431-1861618,186... 29 2.6
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 29 4.5
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 5.9
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 28 7.8
01_07_0128 + 41238510-41239146,41239420-41239461,41240076-412402... 28 7.8
01_01_0874 - 6840708-6840947,6841063-6841149,6841217-6841281,684... 28 7.8
>03_05_0806 + 27846204-27846497,27847309-27847683
Length = 222
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +1
Query: 214 IKHVMSKGDTLQGIALKYGVTMEKIRRANRLFATDSLFLREYLLIPVT 357
+ H + +GDT+ GIALKY + + I+R N + + ++LRE LLIP++
Sbjct: 78 LSHTVRRGDTVPGIALKYSIQVTDIKRFNNMMSDHGIYLRERLLIPIS 125
>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
Length = 368
Score = 45.2 bits (102), Expect = 5e-05
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +1
Query: 178 STCNHMKRNEEYIKHVMSKGDTLQGIALKYGVTMEKIRRANRLFATDSLFLREYLLIPVT 357
ST M +Y+ H + K DTL GIA+KYGV + I+R N L +F + L IP+
Sbjct: 56 STAPPMSSCGQYMLHRVGKLDTLAGIAIKYGVEVADIKRLNGLSTDLQMFAHKTLRIPLP 115
Query: 358 KDSP---FYENG 384
P + +NG
Sbjct: 116 GRHPPSTYQQNG 127
>03_01_0073 +
599626-599856,599960-600041,600646-600689,601303-601411,
601498-601964
Length = 310
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1
Query: 211 YIKHVMSKGDTLQGIALKYGVTMEKIRRANRLFATDSLFLREYLLIPV 354
YI H + + DTL G+A+KYGV + ++R N L +F + L IP+
Sbjct: 56 YILHRVCRFDTLAGVAIKYGVEVADVKRVNGLTTDLQMFAHKTLRIPL 103
>11_06_0081 + 19886848-19888050,19888243-19888896
Length = 618
Score = 36.3 bits (80), Expect = 0.022
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +1
Query: 214 IKHVMSKGDTLQGIALKYGVTMEKIRRANRLFATDSLFLREYLLIPVTKDSPFYENGERV 393
+ +++ + D + IA ++GV I AN + TD+++ LLIPV K P + ++
Sbjct: 204 VTYLVDEFDEVGAIAARFGVDAGNISAANEMAITDTIYPFTTLLIPV-KSKP---DVSQL 259
Query: 394 TELPPPNHRASIAGMPTRN 450
PPP A PT N
Sbjct: 260 RSPPPPPPPPPAAPAPTTN 278
>03_02_0352 + 7749902-7751788,7752547-7752615
Length = 651
Score = 35.1 bits (77), Expect = 0.052
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +1
Query: 418 RASIAGMPTRNSFSPGSPDEKKSFDEFLNRVDSSLADIKRHVEKTKENSEFVKDIDEGYV 597
+A+ AG P SPG ++ F E+ +D D+ R +++ + V I + Y+
Sbjct: 230 KAAPAGQPDFAMSSPGRGKRRRRF-EYTETLDVPARDVPRRLQQLAAKHKVVLCIRQKYI 288
Query: 598 RHRP 609
RH+P
Sbjct: 289 RHKP 292
>02_01_0692 + 5179778-5181847
Length = 689
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/66 (25%), Positives = 37/66 (56%)
Frame = +1
Query: 214 IKHVMSKGDTLQGIALKYGVTMEKIRRANRLFATDSLFLREYLLIPVTKDSPFYENGERV 393
+ ++++ GDT+ IA ++ V +++ AN L + ++ LL+P+ K++P +
Sbjct: 203 VTYLVTWGDTVSAIAARFRVDAQEVLDANTLTESSIIYPFTTLLVPL-KNAPTPDMLAPP 261
Query: 394 TELPPP 411
+ PPP
Sbjct: 262 AQAPPP 267
>01_06_0658 -
30942890-30943054,30943159-30943266,30943448-30943598,
30943683-30943780,30943869-30944020,30944298-30944403,
30944499-30944588,30944668-30944813,30945396-30945695,
30945953-30946038,30947260-30947996
Length = 712
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +1
Query: 214 IKHVMSKGDTLQGIALKYGVTMEKIRRANRLFATDSLFLREYLLIPVTKDSPFYEN 381
+ +V GDT+Q ++ ++G +M+ I AN + D + + IP+ + +
Sbjct: 175 LSYVGVDGDTVQSLSSRFGASMDAIEAANGMAGPDPITTGKVYYIPLNSGEQMFSD 230
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 61 SGLSTLWMSYLKTSNMEEERL--FDERVSIRESARPLKKYGSTCN 189
SG S W++YL+ SN+E L F VSI S + + GS N
Sbjct: 312 SGHSNCWVTYLEVSNLECNSLQQFSVEVSITNSDEIVSRSGSNYN 356
>11_01_0059 -
444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 670 LLHCKTMKRPIDAGLFESRRRACASRNPHLYPSRTHCFL 554
LLH + ++ + AGL RA S HL+ R HC L
Sbjct: 812 LLHARLLRLDLLAGLSSLLLRALTSSALHLHALRVHCLL 850
>04_01_0198 +
2357337-2357339,2357729-2357748,2358324-2358810,
2358977-2359387
Length = 306
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 269 PYFNAIPCKVSPLDITCLMYSSFLFMWLQVLPYFFNGRADSR 144
PY PC+ L + ++ SF++ W+++L F G A +R
Sbjct: 9 PYCKFGPCR---LLVGVFLFYSFIWKWIRILKVFHKGTASAR 47
>03_01_0239 +
1859446-1860112,1861218-1861338,1861431-1861618,
1861710-1861804
Length = 356
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 202 NEEYIKHVMSKGDTLQGIALKYGVTMEKIRRANRLFATDSLFLREYLLIPV 354
N ++ + + KG+ IA KYGVT + N++ L + + L +P+
Sbjct: 171 NVMHLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDDPTKLQMGQILDVPL 221
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 106 MEEERLFDERVSIRESARPLKKYGSTCNHMKRNEEYIKHVMSKGD 240
+E E++ E + ES R K+YGST +NE+Y + S+ D
Sbjct: 297 LETEKVDLENTLVDESQRQSKEYGSTSR--SKNEKYSEGSASESD 339
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 4 VVRKLSSLYCVTFTKFWFSSGLSTLWMSYLKTSNMEEERLFDERVSI 144
+V L +L KF + L S+L TSN E +F++RVS+
Sbjct: 979 IVHVLGALVASGHLKFNLPAAKPKLPSSFLTTSNGEGNSMFEDRVSL 1025
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 364 SPFYENGERVTELPPPNHRASIAGMPTRNSFSPGSP 471
SP Y G + P AS + PT S++PGSP
Sbjct: 1555 SPVYSPGPGYSPTSPSYSPASPSYSPTSPSYTPGSP 1590
>01_07_0128 +
41238510-41239146,41239420-41239461,41240076-41240297,
41240909-41241156,41241296-41241435,41241904-41242027
Length = 470
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 530 MSANDESTLFRNSSKLFFSSGLPGEKLFLVGMP 432
M ++ + FR++S +F S+G+P E + +G P
Sbjct: 208 MISSAKHMTFRSTSSVFLSAGVPTENILYLGGP 240
>01_01_0874 -
6840708-6840947,6841063-6841149,6841217-6841281,
6841976-6842096,6842207-6842350
Length = 218
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 460 PGSPDEKKSFDEFLNRVDSSLADIKRHVEKTKENSEFVKDIDE 588
PG+P S E+ N + SSL+D+ R + E S+ D DE
Sbjct: 32 PGAPSSSSSTGEWHNFMGSSLSDMYR--KPAAEKSDDTSDDDE 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.132 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,486,273
Number of Sequences: 37544
Number of extensions: 386276
Number of successful extensions: 1129
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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