Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2469
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.87 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 376 ENGERVTELPPPNHRASIA 432
           E+GERVT L  P H A I+
Sbjct: 190 ESGERVTFLDTPGHAAFIS 208


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 88  YLKTSNMEEERLFDERVSIRESARPLKKYGSTCNHMKRNEEYIKH 222
           Y K  N EEE+L +ER S +  +R  ++     N  K   EY K+
Sbjct: 19  YEKLCN-EEEKLLEERTSRKRYSRSRER---EQNSYKNEREYRKY 59


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 88  YLKTSNMEEERLFDERVSIRESARPLKKYGSTCNHMKRNEEYIKH 222
           Y K  N EEE+L +ER S +  +R  ++     N  K   EY K+
Sbjct: 19  YEKLCN-EEEKLLEERTSRKRYSRSRER---EQNSYKNEREYRKY 59


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 88  YLKTSNMEEERLFDERVSIRESARPLKKYGSTCNHMKRNEEYIKH 222
           Y K  N EEE+L +ER S +  +R  ++     N  K   EY K+
Sbjct: 19  YEKLCN-EEEKLLEERTSRKRYSRSRER---EQNSYKNEREYRKY 59


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 88  YLKTSNMEEERLFDERVSIRESARPLKKYGSTCNHMKRNEEYIKH 222
           Y K  N EEE+L +ER S +  +R  ++     N  K   EY K+
Sbjct: 19  YEKLCN-EEEKLLEERTSRKRYSRSRER---EQNSYKNEREYRKY 59


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 318 VRSEQSIGPSYFLHSYTIF 262
           +R+   + P+YF H+Y I+
Sbjct: 29  LRTRTKLQPTYFHHTYIIY 47


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 318 VRSEQSIGPSYFLHSYTIF 262
           +R+   + P+YF H+Y I+
Sbjct: 29  LRTRTKLQPTYFHHTYIIY 47


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -2

Query: 302 LLALLIFSIVTPYFNAIPCKVSPLDITCLM 213
           L  +L+  ++  Y N      +P  +TC++
Sbjct: 553 LTIILLAGVLVCYLNTFLLLATPTTVTCIL 582


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -2

Query: 302 LLALLIFSIVTPYFNAIPCKVSPLDITCLM 213
           L  +L+  ++  Y N      +P  +TC++
Sbjct: 643 LTIILLAGVLVCYLNTFLLLATPTTVTCIL 672


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,125
Number of Sequences: 438
Number of extensions: 4081
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)