Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2464
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0928 + 24488891-24489675,24490369-24490421,24490479-244912...    29   1.8  
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804...    29   1.8  
08_02_1461 - 27299891-27301870                                         29   3.2  
05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731...    28   5.5  
01_06_1749 - 39636951-39638102                                         27   9.7  

>12_02_0928 +
           24488891-24489675,24490369-24490421,24490479-24491229,
           24491322-24491533,24491780-24492570,24492686-24492784
          Length = 896

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +3

Query: 165 LPPVKRTT*PLKNWYVLCLCVCLFRR*INLYSMRLRNSCSLTMRRLLYLINRHCCSRRCI 344
           LPP+ +TT PLKN   + L +C      +L   ++    S+T  RL  L   HC   + +
Sbjct: 677 LPPLPKTTIPLKNLRKISLVLCELTN--SLRGSKV--DLSMTFPRLSNLTIDHCIDLKEL 732

Query: 345 P 347
           P
Sbjct: 733 P 733


>04_01_0613 -
           8042568-8042686,8043107-8043206,8043550-8043594,
           8043691-8043770,8045082-8046322,8047077-8047507
          Length = 671

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 249 NLYSMRLRNSCSLTMRRLLYLINRHC 326
           +LY +RLR    L  ++LL + NRHC
Sbjct: 576 SLYKVRLRKQQQLRYQQLLEMCNRHC 601


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 80  HPSNRNALLLHGRNRQGGGTYPRGLSRGPTTSK 178
           H ++    LL GR R GGG + RGL   P  S+
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSR 314


>05_07_0098 +
           27672298-27672561,27672617-27672705,27673111-27673159,
           27673217-27673304,27673891-27674020,27674790-27675366
          Length = 398

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 72  RCNYT*DLRTYVSRWVAHLRCRCL 1
           RC  T  LR    RW  HL+C CL
Sbjct: 301 RCTGTTVLRNKAPRWHEHLQCWCL 324


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 55  SGIVTTAAPPFKPKRITT 108
           S + + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,682,049
Number of Sequences: 37544
Number of extensions: 260823
Number of successful extensions: 537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)