Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2463
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    29   0.16 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   1.1  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    26   2.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   4.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   4.5  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    24   7.9  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    24   7.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   7.9  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 93  MKYVLNKCSRLTSTVKGITSCNKNQTRKIIICVITGGRT 209
           MK + + C+R  S V G     K+  +K+++C+I+ GRT
Sbjct: 212 MKNISHLCTRKNSQVWG-----KDAWKKVVVCIISDGRT 245


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 39   VLSDALVFESHRRVPIFQMKYVLNKCSRLTSTVKGITS 152
            + ++ + F +   +P F  K VL  C+RL   ++G +S
Sbjct: 1281 IFANRVSFNNSTAIPFFSTKSVLWYCNRLFQELEGFSS 1318


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 299 LPPHPSNRNALLLHGRNRQGGGTHP 225
           L PHP N   +LL G N Q   + P
Sbjct: 95  LNPHPENSKIVLLMGSNAQNDPSSP 119


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 53   TGVRIPQASTNFSNEIRTQQMF 118
            T   IP+A+ +F+N+I TQ  F
Sbjct: 1302 TSSDIPKANIDFTNDISTQNTF 1323


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 51   ALVFESHRRVPIFQMKYVLNKCSRLTSTVKGITSCNKNQTRKIII 185
            +L+FE+  +  + ++   LN C +  ST +G  S   N T   II
Sbjct: 1058 SLLFEAIEQNSLSKVMIPLNICQKSFSTAQGCNSIVINSTLSSII 1102


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = -3

Query: 262 FTAEIGRVVVPTRADSPEVLPPVITQIIILRVWFLLHDVIPFTVEVNREHLLS 104
           +  EI  +++    ++  +L  V ++I I  +  +  + +    +V R HLLS
Sbjct: 726 YLGEIANIILQKSPNNVILLKLVTSEIFIRSIKHVFRNFLAVVPQVLRSHLLS 778


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 293 PHPSNRNALLLHGRNRQGGGTHP 225
           PHP N   ++L G N Q     P
Sbjct: 97  PHPDNSKIVILMGSNFQNDANSP 119


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 123 LTSTVKGITSCNKNQTRKIIICVITG 200
           L ST+   TS + N+  K+II  ITG
Sbjct: 274 LISTIHHCTSDSFNELEKLIISKITG 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,054
Number of Sequences: 5004
Number of extensions: 35648
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)