Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2462
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 31 0.69
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142... 30 1.6
03_05_0388 + 23726957-23727418,23730016-23730262,23731072-237312... 29 2.8
02_05_1263 + 35316083-35316185,35317167-35317220,35317665-353179... 29 2.8
01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964... 28 6.4
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 28 8.5
03_03_0131 - 14706123-14706171,14706364-14706422,14706504-147067... 28 8.5
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 31.5 bits (68), Expect = 0.69
Identities = 20/92 (21%), Positives = 43/92 (46%)
Frame = +2
Query: 2 IVIAGEKNGVLAAKAQIEQIHEEMVKKCATVRVEVPKSQHKYVIGARGTTIQEILKETGV 181
+ + E +G + Q +E K V++ P +QHK+++G ++E+ K+
Sbjct: 392 VPVHNELSGKMGIGGQTVNSPKEYAKSVPVVKINSP-AQHKHIVGDLNFLLKELEKDDRT 450
Query: 182 SVEMPPTDSPTGTITLHGPHNKIGLALSKVCE 277
S ++ T ++T + H +L +VC+
Sbjct: 451 STKI--TQDRDRSVTPNVSHANGIQSLQQVCQ 480
>04_04_1500 +
34010819-34011016,34013267-34013308,34014195-34014204,
34014526-34014586,34014621-34014678,34015266-34015412,
34015643-34016205,34018942-34019728
Length = 621
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 86 ATVRVEVPKSQHKYVIGARGTTIQEILKETGV--SVEMPPTDSPTGTITLHGPHNKIGLA 259
AT ++ V S +IG G ++I + TGV S+ +DS I L G ++I A
Sbjct: 488 ATAKISVDASLAGGIIGKGGVNTKQICRVTGVKLSIRDHESDSNLKNIELEGNFDQIKQA 547
Query: 260 LSKVCEKANSVKTAT 304
+ V E ++ +T
Sbjct: 548 SNMVGELIATISPST 562
>03_05_0388 +
23726957-23727418,23730016-23730262,23731072-23731220,
23731313-23731597,23731665-23731889,23734251-23734445
Length = 520
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 74 VKKCATVRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPTGTITL 229
+++ T +++P S VIGA G +I I + +G +V + + G +T+
Sbjct: 388 IRQKVTHNMQIPLSYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTV 439
>02_05_1263 +
35316083-35316185,35317167-35317220,35317665-35317903,
35317989-35318089,35318390-35318583,35318885-35319003,
35319624-35319749,35320081-35320142,35320265-35320348,
35320580-35320664
Length = 388
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +2
Query: 92 VRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDS 208
VR+ VP S +IG G+TI+ ++++ +++ P D+
Sbjct: 145 VRLVVPNSSCGGIIGKGGSTIKSFIEDSHAGIKISPQDN 183
>01_05_0387 -
21695277-21695351,21696186-21696228,21696325-21696454,
21696812-21697028,21697202-21697248,21698132-21698228,
21698637-21698687,21698788-21698919,21699345-21699499,
21700461-21700534,21700566-21700730,21701368-21701420
Length = 412
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +2
Query: 98 VEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPTGTITLHGPHNKI 250
++VP + VIG +G++I E+ V + + P + + GP ++
Sbjct: 348 LDVPPGKMGRVIGRKGSSIMEVKASCNVEIHIGGAKGPPDRVFIIGPVQEV 398
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 128 VIGARGTTIQEILKETGVSVEM--PPTDSPTGTITLHGPHN 244
+IG G+TI+ + ETG S+++ P +DS I + N
Sbjct: 258 IIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHEN 298
>03_03_0131 -
14706123-14706171,14706364-14706422,14706504-14706770,
14706857-14707114,14707207-14707629,14707942-14708514
Length = 542
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 89 TVRVEVPKSQHKYVIGARGTTIQEILKETGVSVEM 193
TVR+ VP Q +IG G IQ I +TG + +
Sbjct: 139 TVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRV 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,321,296
Number of Sequences: 37544
Number of extensions: 392622
Number of successful extensions: 952
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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