Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2462
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr... 115 4e-26
AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned exp... 38 0.009
Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 37 0.016
Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 37 0.016
Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 37 0.016
U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical pr... 36 0.029
AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical ... 34 0.12
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 30 1.9
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 30 1.9
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 30 1.9
U00047-8|AAP68924.1| 510|Caenorhabditis elegans Hypothetical pr... 29 2.5
U00047-7|AAA50693.2| 557|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical p... 29 3.3
AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical ... 29 3.3
AL021501-2|CAA16415.2| 356|Caenorhabditis elegans Hypothetical ... 29 3.3
AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear recep... 29 3.3
AF273813-1|AAG15162.1| 454|Caenorhabditis elegans nuclear recep... 29 3.3
Z92972-4|CAB07489.2| 337|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL021566-4|CAA16505.1| 336|Caenorhabditis elegans Hypothetical ... 29 4.4
U97008-4|AAB52312.1| 430|Caenorhabditis elegans Hypothetical pr... 28 7.6
U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical pr... 28 7.6
U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical pr... 28 7.6
AC024776-20|AAK68473.2| 460|Caenorhabditis elegans Nuclear horm... 28 7.6
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 28 7.6
>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
protein C08H9.2 protein.
Length = 1220
Score = 115 bits (276), Expect = 4e-26
Identities = 61/189 (32%), Positives = 105/189 (55%)
Frame = +2
Query: 2 IVIAGEKNGVLAAKAQIEQIHEEMVKKCATVRVEVPKSQHKYVIGARGTTIQEILKETGV 181
I + GEK+GVL A+I QI E K ++++V V ++QH+Y++G + I ++L++TG
Sbjct: 253 ISVTGEKDGVLRVAAEIRQIIESK-KNVSSIQVAVARTQHRYIVGQSRSGIHDVLQKTGC 311
Query: 182 SVEMPPTDSPTGTITLHGPHNKIGLALSKVCEKANSVKTATVDAPTWIHXXXXXXXXXXX 361
VE+P DS + +TL G + AL+ V E+A+SV T ++ AP W+H
Sbjct: 312 VVEVPAEDSGSDQVTLIGNAQDLAKALALVIERASSVVTQSISAPNWLHKHLIGPKGATL 371
Query: 362 XXXTQDFSKVHVDITHSEDKVKIDGPPEEVERAQVELDNFVKNLLATLTYVELSVDPKFF 541
+ + V ++ +S +++ ++G PEEV+ A L V L L ++ V P
Sbjct: 372 TALVPNRNNVQIEFDNS-NQIFLEGSPEEVKLAFEPLSKEVARLQMELAIEKVKVHPTLH 430
Query: 542 KHIIGKNGN 568
+H+IG+ G+
Sbjct: 431 RHVIGRGGS 439
Score = 57.2 bits (132), Expect = 1e-08
Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 6/194 (3%)
Frame = +2
Query: 8 IAGEKNGVLAAKAQIEQIHEEMVKKCATVRVEVPKSQHKYVIGARGTTIQEILKETGVSV 187
I G+K V A ++ + +E + V + K K+++G G +I+++ ET +
Sbjct: 539 IRGDKTEVDAVYKKLTALSKEYAENNYQQTVAIFKEFLKHIVGKGGASIRKLRDETETRI 598
Query: 188 EMPPTDSPTGTITLHGPHNKIGLA---LSKVCEKANSVKTATVDAPTWIHXXXXXXXXXX 358
++P + S G IT+ G + A L+K+ E+ +V +++ P +
Sbjct: 599 DLPESGSDDGKITVTGKQANVEKAVAQLNKIQEELANVAEESIEIPQKVQSRFFGNGRRL 658
Query: 359 XXXXTQDFSKVHVDITHSED---KVKIDGPPEEVERAQVELDNFVKNLLATLTYVELSVD 529
+ VH+ + KV I GP +V +A L K+ +
Sbjct: 659 ISDIEDECGGVHIRFPSEKSESTKVTIRGPAGDVAKAVGLLSALAKDKEENYVEDTVKAK 718
Query: 530 PKFFKHIIGKNGNQ 571
P+F + +IGK G++
Sbjct: 719 PEFHRFLIGKGGSK 732
Score = 51.2 bits (117), Expect = 7e-07
Identities = 40/192 (20%), Positives = 89/192 (46%), Gaps = 5/192 (2%)
Frame = +2
Query: 2 IVIAGEKNGVLAAKAQIEQIHEEMVKKCATVRVEVPKSQHKYVIGARGTTIQEILKETGV 181
+V+ GE+ A+A+I I + + A+ +++PK H +IG G ++ + ET
Sbjct: 112 VVVKGERAKAEEARARI--IRDLQTQ--ASREIDIPKDHHGRLIGKEGALLRNLEAETNC 167
Query: 182 SVEMPPTDSPTGTITLHGPHNKIGLA---LSKVCEKANSVKTATVDAPTWIHXXXXXXXX 352
+++P D P+ IT+ GP I A + V E+ + T + P +
Sbjct: 168 RIQIPNRDGPSSKITITGPREGIQRAAAHILAVSEREAKLATEHIVCPKNLVAFVRGPKN 227
Query: 353 XXXXXXTQDFS-KVHVDITH-SEDKVKIDGPPEEVERAQVELDNFVKNLLATLTYVELSV 526
TQ+ K+++ H + + + + G + V R E+ +++ ++ ++++V
Sbjct: 228 ETYDRLTQNNGVKINIPPPHVTNEVISVTGEKDGVLRVAAEIRQIIES-KKNVSSIQVAV 286
Query: 527 DPKFFKHIIGKN 562
++I+G++
Sbjct: 287 ARTQHRYIVGQS 298
Score = 50.8 bits (116), Expect = 9e-07
Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 9/184 (4%)
Frame = +2
Query: 41 KAQIEQIHEEMVK---KCATVRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSP 211
K E + +E+ + + A +V+V + H++VIG G+ I +I + GV + +P ++
Sbjct: 401 KLAFEPLSKEVARLQMELAIEKVKVHPTLHRHVIGRGGSLISKIKDQHGVQITIPNEETN 460
Query: 212 TGTITLHGPHNKIGLALSK---VCEKANSVKTATVDAPTWIHXXXXXXXXXXXXXXTQDF 382
+ I + G + A+++ + K + K+ + P +H
Sbjct: 461 SDEIVVEGKKEGVKKAVTEIRAIVTKIENEKSRDIIIPQRLHKLIIGSKGSGVQVIRDSH 520
Query: 383 SKVHV---DITHSEDKVKIDGPPEEVERAQVELDNFVKNLLATLTYVELSVDPKFFKHII 553
V V D D V I G EV+ +L K +++ +F KHI+
Sbjct: 521 PNVSVVFPDAKSKSDVVNIRGDKTEVDAVYKKLTALSKEYAENNYQQTVAIFKEFLKHIV 580
Query: 554 GKNG 565
GK G
Sbjct: 581 GKGG 584
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +3
Query: 549 LLARMGTNINRLKDETGVVININENDGKQYLYVLEGSHQRCS*C 680
++ + G I LK++ GV+IN+ DG + + ++G ++ + C
Sbjct: 1021 IIGQRGATITALKEKYGVIINVPREDGNETI-TIQGYEEKANEC 1063
>AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned
expression site protein 4 protein.
Length = 430
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 89 TVRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPTGTITLHGPHNKIGLALSK 268
T+R+ + + +IG +G I++I +E+G + + P +T+ G IG A +
Sbjct: 73 TIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSCPERIVTITGTLGVIGKAFNM 132
Query: 269 VCEK 280
VC K
Sbjct: 133 VCNK 136
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/50 (20%), Positives = 27/50 (54%)
Frame = +3
Query: 510 TWNYLLTQNSLNTLLARMGTNINRLKDETGVVININENDGKQYLYVLEGS 659
T L+ + +++ + G I ++++E+G INI++ + + + G+
Sbjct: 73 TIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGSCPERIVTITGT 122
>Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical
protein C12D8.1c protein.
Length = 548
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 98 VEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPT 214
V VP+S +IG +G TI+ + ETG ++ P D P+
Sbjct: 190 VVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPS 228
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 104 VPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPTG---TITLHGPHNKIGLA 259
+P+S VIG G+ IQ I + G V+M P P+ +TL G + + A
Sbjct: 13 IPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTLEGSRSNVETA 67
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 80 KCATVRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPTG 217
+ +T + VP ++ VIG G TI++I E+G E+ + PTG
Sbjct: 275 EASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCEL--SRDPTG 318
>Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical
protein C12D8.1b protein.
Length = 611
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 98 VEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPT 214
V VP+S +IG +G TI+ + ETG ++ P D P+
Sbjct: 253 VVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPS 291
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 104 VPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPTG---TITLHGPHNKIGLA 259
+P+S VIG G+ IQ I + G V+M P P+ +TL G + + A
Sbjct: 76 IPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTLEGSRSNVETA 130
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 80 KCATVRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPTG 217
+ +T + VP ++ VIG G TI++I E+G E+ + PTG
Sbjct: 338 EASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCEL--SRDPTG 381
>Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical
protein C12D8.1a protein.
Length = 589
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 98 VEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPT 214
V VP+S +IG +G TI+ + ETG ++ P D P+
Sbjct: 231 VVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPS 269
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 104 VPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPTG---TITLHGPHNKIGLA 259
+P+S VIG G+ IQ I + G V+M P P+ +TL G + + A
Sbjct: 54 IPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTLEGSRSNVETA 108
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 80 KCATVRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPTG 217
+ +T + VP ++ VIG G TI++I E+G E+ + PTG
Sbjct: 316 EASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCEL--SRDPTG 359
>U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical
protein M01A10.1 protein.
Length = 680
Score = 35.9 bits (79), Expect = 0.029
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Frame = +2
Query: 89 TVRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSP---TGTITLHGPHNKIGLA 259
+++V+VP+S ++G +G+ I++I ET ++ P D P T+ + G NK+ +
Sbjct: 332 SLQVKVPRSTVGAIMGLQGSNIKKISNETETKIQFMPDDDPKLMERTLVVIGNKNKVYVC 391
Query: 260 ---LSKVCEKANSVKTAT 304
L K+ E ANS T
Sbjct: 392 ARLLQKIVE-ANSENANT 408
Score = 32.7 bits (71), Expect = 0.27
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +2
Query: 2 IVIAGEKNGVLAAKAQIEQIHEEMVKKCAT----VRVEVPKSQHKYVIGARGTTIQEILK 169
+V+ G KN V +++I E + T + +P S+ VIG G TI++I K
Sbjct: 379 LVVIGNKNKVYVCARLLQKIVEANSENANTPISLFYMLIPASKCGLVIGRGGETIRQINK 438
Query: 170 ETGVSVEM 193
E+G EM
Sbjct: 439 ESGAYCEM 446
>AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical
protein C36E6.1b protein.
Length = 641
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = +2
Query: 89 TVRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSP---TGTITLHGPHNKIGLA 259
+++V+VP+ ++G +G I+++ ETG ++ P D P ++ + G NK+ +
Sbjct: 247 SLQVKVPRCTVGAIMGLQGKNIKKLSDETGTKIQFLPDDDPKLMERSLAIIGNKNKVYVC 306
Query: 260 --LSKVCEKANS 289
L K +ANS
Sbjct: 307 AQLIKAIVEANS 318
Score = 31.5 bits (68), Expect = 0.62
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Frame = +2
Query: 2 IVIAGEKNGVLAA----KAQIEQIHEEMVKKCATVRVEVPKSQHKYVIGARGTTIQEILK 169
+ I G KN V KA +E E + +P S+ VIG G TI++I +
Sbjct: 294 LAIIGNKNKVYVCAQLIKAIVEANSEAANAPVVLFYMVIPASKCGLVIGRGGETIKQINQ 353
Query: 170 ETGVSVEM---PPTDSPTGTITLHGPHNKIGLALSKVCEKANSVKTATVDAP 316
E+G E+ P T+ T + G ++ A + K + T P
Sbjct: 354 ESGAHCELSRDPNTNPIEKTFVIRGSEAQVEHAKHLIRVKVGDIPPNTPYTP 405
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 92 VRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPTG--TITLHGPHNKIGLALS 265
V V VP+ VIG G +Q I +++G V++ S TG + ++G I A +
Sbjct: 57 VAVPVPEQCVGLVIGRNGAEVQAISQKSGCRVQVTVQPSSTGFRLVEIYGIPENIERAKA 116
Query: 266 KVCE 277
+ E
Sbjct: 117 YISE 120
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2
Query: 92 VRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPT 214
VR+ VP S +IGA+G I+ I+++TG SV++ + T
Sbjct: 419 VRMWVPDSMIGALIGAKGKNIKMIIRDTGASVKIEAPEEKT 459
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +2
Query: 128 VIGARGTTIQEILKETGVSVEMPPTDSPTGTITLHGPHNKIGLALSKVCEKANSVKTATV 307
+IG G++I+EI+++TG ++ + P G I+ + +GL + + S++ A V
Sbjct: 289 LIGKAGSSIKEIMQKTGTNITVTKYIEPPGGISGLTANELLGLMERTIMVRGPSIE-AVV 347
Query: 308 DAPTWI 325
A I
Sbjct: 348 QAEALI 353
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2
Query: 92 VRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPT 214
VR+ VP S +IGA+G I+ I+++TG SV++ + T
Sbjct: 543 VRMWVPDSMIGALIGAKGKNIKMIIRDTGASVKIEAPEEKT 583
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +2
Query: 128 VIGARGTTIQEILKETGVSVEMPPTDSPTGTITLHGPHNKIGLALSKVCEKANSVKTATV 307
+IG G++I+EI+++TG ++ + P G I+ + +GL + + S++ A V
Sbjct: 413 LIGKAGSSIKEIMQKTGTNITVTKYIEPPGGISGLTANELLGLMERTIMVRGPSIE-AVV 471
Query: 308 DAPTWI 325
A I
Sbjct: 472 QAEALI 477
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +3
Query: 510 TWNYLLTQNSLNTLLARMGTNINRLKDETGVVININE 620
+W + + + ++ + G+N+N +++ TG +I IN+
Sbjct: 1795 SWKLTIPAYAASRVIGKGGSNVNAVREATGAIIEINK 1831
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +3
Query: 510 TWNYLLTQNSLNTLLARMGTNINRLKDETGVVININE 620
+W + + + ++ + G+N+N +++ TG +I IN+
Sbjct: 1795 SWKLTIPAYAASRVIGKGGSNVNAVREATGAIIEINK 1831
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +3
Query: 510 TWNYLLTQNSLNTLLARMGTNINRLKDETGVVININE 620
+W + + + ++ + G+N+N +++ TG +I IN+
Sbjct: 616 SWKLTIPAYAASRVIGKGGSNVNAVREATGAIIEINK 652
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +3
Query: 510 TWNYLLTQNSLNTLLARMGTNINRLKDETGVVININE 620
+W + + + ++ + G+N+N +++ TG +I IN+
Sbjct: 616 SWKLTIPAYAASRVIGKGGSNVNAVREATGAIIEINK 652
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +3
Query: 510 TWNYLLTQNSLNTLLARMGTNINRLKDETGVVININE 620
+W + + + ++ + G+N+N +++ TG +I IN+
Sbjct: 1795 SWKLTIPAYAASRVIGKGGSNVNAVREATGAIIEINK 1831
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +3
Query: 510 TWNYLLTQNSLNTLLARMGTNINRLKDETGVVININE 620
+W + + + ++ + G+N+N +++ TG +I IN+
Sbjct: 1795 SWKLTIPAYAASRVIGKGGSNVNAVREATGAIIEINK 1831
>U00047-8|AAP68924.1| 510|Caenorhabditis elegans Hypothetical
protein ZK418.9b protein.
Length = 510
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 104 VPKSQHKYVIGARGTTIQEILKETGVSVEMPPT-DSPTG--TITLHGPHNKIGLALSKVC 274
VP+ VIG G+ I+ I + +G V+M P S G T+ GP +++ +A +
Sbjct: 13 VPEKVVGLVIGKGGSEIRLIQQTSGCRVQMDPDHQSVNGFRNCTIEGPPDQVAVARQMIT 72
Query: 275 EKANSVKT 298
+ N +T
Sbjct: 73 QVINRNQT 80
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 98 VEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPTG---TITLHGPHNKIGLALSK 268
V VP+ +IG G I+ + ETG ++ P +P + G ++I A +
Sbjct: 197 VIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAVIMGTRDQIYRATER 256
Query: 269 VCEKAN 286
+ E N
Sbjct: 257 ITEIVN 262
>U00047-7|AAA50693.2| 557|Caenorhabditis elegans Hypothetical
protein ZK418.9a protein.
Length = 557
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 104 VPKSQHKYVIGARGTTIQEILKETGVSVEMPPT-DSPTG--TITLHGPHNKIGLALSKVC 274
VP+ VIG G+ I+ I + +G V+M P S G T+ GP +++ +A +
Sbjct: 60 VPEKVVGLVIGKGGSEIRLIQQTSGCRVQMDPDHQSVNGFRNCTIEGPPDQVAVARQMIT 119
Query: 275 EKANSVKT 298
+ N +T
Sbjct: 120 QVINRNQT 127
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 98 VEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTDSPTG---TITLHGPHNKIGLALSK 268
V VP+ +IG G I+ + ETG ++ P +P + G ++I A +
Sbjct: 244 VIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAVIMGTRDQIYRATER 303
Query: 269 VCEKAN 286
+ E N
Sbjct: 304 ITEIVN 309
>Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 13 WGKKWCAGCKGSNRANT*RNGQEMCNCSGRSA 108
+G C GCKG R + N Q +C GR A
Sbjct: 110 YGVNACNGCKGFFRRSVWHNRQYLCRFEGRCA 141
>AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 13 WGKKWCAGCKGSNRANT*RNGQEMCNCSGRSA 108
+G C GCKG R + N Q +C GR A
Sbjct: 110 YGVNACNGCKGFFRRSVWHNRQYLCRFEGRCA 141
>AL021501-2|CAA16415.2| 356|Caenorhabditis elegans Hypothetical
protein Y61B8A.2 protein.
Length = 356
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 79 LDHFFMYLLDLSLCSQHTIFF 17
++HFF LDL+LC+ T++F
Sbjct: 68 VNHFFCAFLDLTLCTLSTVYF 88
>AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear receptor
NHR-62 protein.
Length = 489
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 13 WGKKWCAGCKGSNRANT*RNGQEMCNCSGRSA 108
+G C GCKG R + N Q +C GR A
Sbjct: 84 YGVNACNGCKGFFRRSVWHNRQYLCRFEGRCA 115
>AF273813-1|AAG15162.1| 454|Caenorhabditis elegans nuclear receptor
NHR-62 protein.
Length = 454
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 13 WGKKWCAGCKGSNRANT*RNGQEMCNCSGRSA 108
+G C GCKG R + N Q +C GR A
Sbjct: 49 YGVNACNGCKGFFRRSVWHNRQYLCRFEGRCA 80
>Z92972-4|CAB07489.2| 337|Caenorhabditis elegans Hypothetical
protein T19C9.4 protein.
Length = 337
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 82 FLDHFFMYLLDLSLCSQHTIFF 17
FL+H F LLD+ CS T+FF
Sbjct: 67 FLNHLFGGLLDVCFCSFSTLFF 88
>AL021566-4|CAA16505.1| 336|Caenorhabditis elegans Hypothetical
protein F08E10.6 protein.
Length = 336
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 82 FLDHFFMYLLDLSLCSQHTIFF 17
FL+H F L D+ +CS T++F
Sbjct: 67 FLNHLFCALFDICMCSLSTLYF 88
>U97008-4|AAB52312.1| 430|Caenorhabditis elegans Hypothetical
protein C03G6.12 protein.
Length = 430
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +2
Query: 422 VKIDGPPEEVE---RAQVELDNFVKNLLATLTYVELSVD 529
++ DG P++ R +D +KN++ TLTYVEL ++
Sbjct: 136 IQCDGNPKKDSSHFRDFDSIDEKIKNIIDTLTYVELKLE 174
>U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical
protein F26B1.2c protein.
Length = 380
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 89 TVRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTD-SPTGTITLHGPHNKI 250
T +V +P +IG G I I +E+G + + ++ P IT+ G +I
Sbjct: 301 TAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQPERIITIKGTEQQI 355
>U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical
protein F26B1.2a protein.
Length = 397
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 89 TVRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMPPTD-SPTGTITLHGPHNKI 250
T +V +P +IG G I I +E+G + + ++ P IT+ G +I
Sbjct: 318 TAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQPERIITIKGTEQQI 372
>AC024776-20|AAK68473.2| 460|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 274 protein.
Length = 460
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +2
Query: 74 VKKCATVRVEVPKSQHKYVIGARGTTIQEILKETGVSVEMP-----PTDSPTGTITLHGP 238
++KC TV ++ Q + V+G R I+E + +T + E+P S TG+++ P
Sbjct: 93 LQKCYTVGMKASAIQRRDVMGPRKPKIKESIVKTEIIEEVPKLIMSSNPSSTGSMSEGPP 152
Query: 239 HNK 247
+K
Sbjct: 153 KHK 155
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +3
Query: 150 QSRKFLRRLVSLLKCLQRILLQAPSPFMDLIIKLALLY 263
++++F+R+L + LQ +LLQ PF IKL+LL+
Sbjct: 912 RNQEFVRKLDGPILSLQELLLQYVVPFKLHKIKLSLLH 949
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,918,969
Number of Sequences: 27780
Number of extensions: 361555
Number of successful extensions: 1182
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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