Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2459
(442 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 146 2e-36
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 113 2e-26
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 110 1e-25
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 99 1e-22
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 93 2e-20
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 89 2e-19
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 86 2e-18
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 85 5e-18
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 85 5e-18
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 83 1e-17
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 79 3e-16
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 78 5e-16
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 77 1e-15
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 75 5e-15
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 73 3e-14
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 68 7e-13
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 54 1e-08
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 37 0.002
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 31 0.059
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 3.0
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 25 3.9
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 3.9
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 24 9.0
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 146 bits (353), Expect = 2e-36
Identities = 70/133 (52%), Positives = 92/133 (69%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGVTDRVVNQLLARMDGAEGGARGPVIA 183
VRD+F +A M +PC+LFFDEFDS+AP+RG DSTGVTDRVVNQ+L +MDGAE ++A
Sbjct: 688 VRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTGVTDRVVNQILTQMDGAESLDGVYIVA 747
Query: 184 ATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKNLTVDQEVDLPKVV*THRG 363
AT+RPD++DPALLR GRL K I+C+LP+ R E+L L ++ L K+ G
Sbjct: 748 ATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDG 807
Query: 364 LHFRDLNSYWYRA 402
+ DL+S Y A
Sbjct: 808 YTYADLSSLLYDA 820
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 113 bits (271), Expect = 2e-26
Identities = 63/135 (46%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDS--TGVTDRVVNQLLARMDGAEGGARGPV 177
VRD+FDKA PC++F DE DS+A RG + +G DRVVNQLL MDG V
Sbjct: 579 VRDIFDKARAAAPCVVFLDELDSIAKARGASAGDSGGGDRVVNQLLTEMDGVNSKKNVFV 638
Query: 178 IAATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKNLTVDQEVDLPKVV*TH 357
I AT+RPD +DPAL+R GRL + IY LPD R IL T ++ V ++VDL V
Sbjct: 639 IGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKAT 698
Query: 358 RGLHFRDLNSYWYRA 402
G DL RA
Sbjct: 699 HGFSGADLEFVVQRA 713
Score = 100 bits (240), Expect = 9e-23
Identities = 54/128 (42%), Positives = 76/128 (59%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGVTDRVVNQLLARMDGAEGGARGPVIA 183
+R F++A+ P I+F DE DS+APKR + V RVV+QLL MDG + + V+A
Sbjct: 306 LRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNVVVMA 365
Query: 184 ATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKNLTVDQEVDLPKVV*THRG 363
AT+RP+ +DPAL R GR + + +PD GR EIL TKN+ + +VDL ++ G
Sbjct: 366 ATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHG 425
Query: 364 LHFRDLNS 387
DL S
Sbjct: 426 YVGSDLAS 433
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 110 bits (264), Expect = 1e-25
Identities = 54/112 (48%), Positives = 73/112 (65%)
Frame = +1
Query: 1 AVRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGVTDRVVNQLLARMDGAEGGARGPVI 180
AVR VF +A PC++FFDE D++ P+R + + RVVN LL +DG + VI
Sbjct: 573 AVRQVFLRARASSPCVIFFDELDAMVPRRDDSLSEASSRVVNTLLTELDGLSDRSGVYVI 632
Query: 181 AATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKNLTVDQEVDL 336
AAT+RPD++DPA+LR GRL K + +LPD R EIL TLTK + +EV+L
Sbjct: 633 AATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNL 684
Score = 78.2 bits (184), Expect = 5e-16
Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGVTDRVVNQLLARMDGAE----GGARG 171
VR+VF++A PC++F DE D++ PKR + R+V Q L MD G
Sbjct: 256 VREVFEEAKSLAPCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCMDELSFEKTDGKPV 315
Query: 172 PVIAATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKNLTVDQEVD 333
VI AT+RPD +D AL RAGR + I +P + R +IL T+ K L + + D
Sbjct: 316 LVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFD 369
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 99 bits (238), Expect = 1e-22
Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 5/119 (4%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGH--DSTGVTDRVVNQLLARMD--GAEGGARG 171
VR+VF+KA PC++FFDE DS+AP RG+ DS V DRVV+QLLA +D +
Sbjct: 736 VRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSGNVMDRVVSQLLAELDSISKDNNKYV 795
Query: 172 PVIAATSRPDLVDPALLRAGRLQKHIYCEL-PDRWGRHEILPTLTKNLTVDQEVDLPKV 345
VI AT+RPDL+DP+LLR GR K +Y + + +L LTK +D+ +DL ++
Sbjct: 796 FVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEI 854
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 93.1 bits (221), Expect = 2e-20
Identities = 48/112 (42%), Positives = 69/112 (61%)
Frame = +1
Query: 1 AVRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGVTDRVVNQLLARMDGAEGGARGPVI 180
AVR VF KA P ++FFDE D+L RG D++ +DRVV LL +DG E V+
Sbjct: 629 AVRQVFQKARQASPSVIFFDEIDALTANRGEDNS--SDRVVAALLNELDGIEALRNVLVL 686
Query: 181 AATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKNLTVDQEVDL 336
AAT+RPD++DPAL+R GRL + +Y P+ R +I+ + + ++VDL
Sbjct: 687 AATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDL 738
Score = 83.0 bits (196), Expect = 2e-17
Identities = 42/99 (42%), Positives = 59/99 (59%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGVTDRVVNQLLARMDGAEGGARGPVIA 183
+R +F+ A +P I+F DE D+LAPKR D + R V LL +DG + VIA
Sbjct: 361 LRKIFEDARAHQPSIIFIDEIDALAPKRTEDVSEAESRAVATLLTLLDGMANAGKVVVIA 420
Query: 184 ATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTL 300
AT+RP+ +D AL R GRL+K I +PD+ R +I+ L
Sbjct: 421 ATNRPNSIDEALRRPGRLEKEIEIGIPDKSARLDIIKLL 459
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 89.4 bits (212), Expect = 2e-19
Identities = 45/102 (44%), Positives = 61/102 (59%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGVTDRVVNQLLARMDGAEGGARGPVIA 183
+R +F++A +P I+FFDE D LAP R + +V+ LLA MDG E + +I
Sbjct: 353 LRLLFEEAKSTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGMESRGQVIIIG 412
Query: 184 ATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKN 309
AT+RPD VDPAL R GR + Y LPDR R +I+ T+N
Sbjct: 413 ATNRPDAVDPALRRPGRFDREFYFPLPDRDARKKIIEIHTRN 454
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 86.2 bits (204), Expect = 2e-18
Identities = 50/115 (43%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGV---TDRVVNQLLARMDGAEGGARGP 174
VRDVF A P I+F DE D++A KR TG R++ +LL +MDG + GA
Sbjct: 216 VRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVK 275
Query: 175 VIAATSRPDLVDPALLRAGRLQKHI-YCELPDRWGRHEILPTLTKNLTVDQEVDL 336
VI AT+R D +DPALLR GRL + I + DR R + T+T + + EVDL
Sbjct: 276 VIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDL 330
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 85.0 bits (201), Expect = 5e-18
Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHD----STGVTDRVVNQLLARMDGAEGGARG 171
VRD+F A PCI+F DE D++ RG S + +NQLL MDG
Sbjct: 377 VRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTLNQLLVEMDGFTSSEHI 436
Query: 172 PVIAATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKNLTVDQEVDL 336
V A T+RPD++DPALLR GR + I + PD GR +I K++ +DL
Sbjct: 437 VVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNIDL 491
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 85.0 bits (201), Expect = 5e-18
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Frame = +1
Query: 1 AVRDVFDKADMKRPCILFFDEFDSLAPKRGHDS--TGVTDRVVNQLLARMDGAEGGARGP 174
A R+ D+ + I+ FDE D++ KRG TGV D+VVNQLLA+MDG +
Sbjct: 360 AEREYRDRGEESGLHIIIFDELDAICKKRGSSGGDTGVGDQVVNQLLAKMDGVDQLNNIL 419
Query: 175 VIAATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKNLT----VDQEVDLPK 342
VI T+R D++D ALLR GRL+ H+ LPD GR +IL T + ++ +VD+ +
Sbjct: 420 VIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEE 479
Query: 343 V 345
+
Sbjct: 480 L 480
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 83.4 bits (197), Expect = 1e-17
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGVT---DRVVNQLLARMDGAEGGARGP 174
+R++F A PC++F DE D++ +R + T R + +LL +MDG + +
Sbjct: 214 IREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTK 273
Query: 175 VIAATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKNLTVDQEVDLPKVV*T 354
+I AT+RPD +DPALLR GRL + I LP+ GR EIL + ++ E+D +V
Sbjct: 274 IIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKL 333
Query: 355 HRGLHFRDLNS 387
G + DL +
Sbjct: 334 TDGTNGADLRN 344
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 79.0 bits (186), Expect = 3e-16
Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTG---VTDRVVNQLLARMDGAEGGARGP 174
VR++F+ A K+ CI+FFDE D++ R D G R + +L+ ++DG +
Sbjct: 261 VRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK 320
Query: 175 VIAATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKNLTVDQEV 330
V+ AT+RP+ +D AL+R GR+ + + LPD GR IL K++ +D+++
Sbjct: 321 VLFATNRPNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDI 372
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 78.2 bits (184), Expect = 5e-16
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGVTDRVVN----QLLARMDGAEGGARG 171
VRD F A K P I+F DE D++ KR DS DR V +LL ++DG R
Sbjct: 267 VRDAFALAKEKSPAIIFIDELDAIGTKR-FDSEKAGDREVQRTMLELLNQLDGFSSDDRV 325
Query: 172 PVIAATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKNLTVDQEVD 333
VIAAT+R D +DPALLR+GRL + + LP+ R IL ++ + +D +++
Sbjct: 326 KVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDIN 379
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 77.0 bits (181), Expect = 1e-15
Identities = 40/96 (41%), Positives = 57/96 (59%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGVTDRVVNQLLARMDGAEGGARGPVIA 183
+R +F++A +P I+FFDE D LAP R +V+ LLA MDG + + VI
Sbjct: 459 LRLLFEEARRVQPSIIFFDEIDGLAPIRSSKQEQTHSSIVSTLLALMDGLDTRGQVVVIG 518
Query: 184 ATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEIL 291
AT+RP+ +DPAL R GR + Y LP++ R +IL
Sbjct: 519 ATNRPNDLDPALRRPGRFDREFYFPLPNKQARMKIL 554
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 74.9 bits (176), Expect = 5e-15
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGVTDRVVNQLLARMDGAEGGA--RGPV 177
VR++F A + P I+F DE D++ KR + +NQLL +DG PV
Sbjct: 348 VRELFAAARKQAPSIIFIDELDAIGQKRNARDAAHMRQTLNQLLVDLDGFSKNEDLAHPV 407
Query: 178 --IAATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKNLTVDQEVDLPKVV* 351
I AT+ P+ +DPAL R GR +HI+ LPD GR IL T+++ + ++VDL +
Sbjct: 408 VFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIAR 467
Query: 352 THRGLHFRDLNSYWYRATDKIEKQL 426
G DL + +A K L
Sbjct: 468 GTSGFAGADLANLINQAAVYASKNL 492
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 72.5 bits (170), Expect = 3e-14
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGVTD----RVVNQLLARMDGAEGGARG 171
VR++F A P I+F DE DS+ R S G D R + +LL ++DG E
Sbjct: 227 VRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNI 286
Query: 172 PVIAATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKNLTVDQEVDLPKV 345
VI AT+R D++DPALLR GR+ + I P R EIL ++++ + + +DL +
Sbjct: 287 KVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSI 344
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 67.7 bits (158), Expect = 7e-13
Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGVT---DRVVNQLLARMDGAEGGARG- 171
VR +F+ A+ P I+F DE D++ KR +G R + +LL ++DG + R
Sbjct: 273 VRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDI 332
Query: 172 PVIAATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTKNLTVDQEVDLPKVV 348
VI AT+R +DPAL+R GR+ + I E PD + +I T + + ++V+L +++
Sbjct: 333 KVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELI 391
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 54.0 bits (124), Expect = 1e-08
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDSTGVTDRVVNQLLARMDGAEGGARGP-VI 180
VR +F+ A ++P I+F DE DSL R + + R+ + L +M+G G V+
Sbjct: 210 VRQLFEMAREQKPSIIFIDEIDSLCGSRSEGESESSRRIKTEFLVQMNGVGKDESGVLVL 269
Query: 181 AATSRPDLVDPALLRAGRLQKHIYCELPDRWGR 279
AT+ P +D A+ R R +K IY LP+ R
Sbjct: 270 GATNIPWTLDSAIRR--RFEKRIYIPLPNAHAR 300
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 36.7 bits (81), Expect = 0.002
Identities = 37/112 (33%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Frame = +1
Query: 4 VRDVFDKADMKRPCILFFDEFDSLAPKRGHDST--GVTDRVVNQL------LARMDGAEG 159
VR +F A P I+F DE DSL R D + R+ + LAR +
Sbjct: 540 VRALFTLAKKLSPSIIFVDEIDSLLSARSSDGNEHETSRRIKTEFLIQWSSLARAAASRQ 599
Query: 160 GARGP---VIAATSRPDLVDPALLRAGRLQKHIYCELPDRWGRHEILPTLTK 306
A P V+AAT+ P +D A R R + Y LPD R L L K
Sbjct: 600 TADHPRVLVLAATNLPWCIDDAARR--RFVRRTYIPLPDETTRRLHLNNLLK 649
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 31.5 bits (68), Expect = 0.059
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 130 LLARMDGAEGGARGPVIAATSRPDLVDPALLRAGRLQKHIY 252
LL +DG + T+ P+ +DPAL+R GR+ Y
Sbjct: 327 LLNALDGVTSSDERIIFMTTNHPEKLDPALVRPGRVDVKAY 367
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.8 bits (54), Expect = 3.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 46 ILFFDEFDSLAPKRGHDSTGVTDRVVNQLLARMDGAEGGARGPVIAATS 192
+ +F+ D ++ + +TD LLAR DG+ G P IAA +
Sbjct: 1245 LAYFETLDDISVASRYKGWVITDEYDMMLLARKDGS--GVLEPKIAANT 1291
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 25.4 bits (53), Expect = 3.9
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 165 GPALGAVHPRQQLVHHSVRHPGRVVTTFGR-ETVEFVEE-QYAR 40
G A GA Q+ +H+ V R TTF R +T+E + +YAR
Sbjct: 4 GKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYAR 47
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.4 bits (53), Expect = 3.9
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -3
Query: 341 FGRSTSWSTVRFFVNVGSISCLPHLSGSSQ*ICF*SLPALSSAGSTRSGLDVA 183
FG + ++T F + S LP+ SGSS F LP SA + S D++
Sbjct: 263 FGPTLGYNTPPFGYPPTTSSALPNASGSSS--SFFGLPTAVSASAGTSFSDIS 313
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 24.2 bits (50), Expect = 9.0
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +3
Query: 297 IDEKSNRRPRGRPSESCLNAPRAT 368
+D+K N P+G+ E C+ T
Sbjct: 341 LDQKGNEMPQGKEGEICVRGINVT 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,192
Number of Sequences: 5004
Number of extensions: 33728
Number of successful extensions: 129
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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