Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2458
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490...    31   0.71 
05_05_0267 - 23704249-23704401,23704476-23704780,23704967-237056...    28   8.7  

>01_05_0104 +
           18148396-18148642,18148797-18148886,18148972-18149072,
           18149174-18149287,18149381-18149462,18149592-18149659,
           18149747-18149806,18149885-18150009,18150663-18150861,
           18150942-18151073,18151152-18151244,18151360-18152244,
           18152339-18152664,18153003-18153341,18153911-18153996,
           18154054-18154139
          Length = 1010

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +1

Query: 397 DIDTISFEELASKFSNHIIPQINVTMERHKLFNRRQNLEESIDNYVTDLKNIGRRCN 567
           D+D I+ E   S     I        +  KL  + +N++ SID  V  L N+G +CN
Sbjct: 541 DVDMITDEGNGSDLKEEISRLHMQDNDIAKLEAKLENVQRSIDRLVMSLPNVGTQCN 597


>05_05_0267 -
           23704249-23704401,23704476-23704780,23704967-23705674,
           23707772-23708114,23708300-23708374,23708625-23708675,
           23708747-23708818,23708903-23709042,23709227-23709280,
           23709446-23709553,23709769-23709864,23709946-23710005,
           23710352-23710411,23711699-23711927
          Length = 817

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
 Frame = +1

Query: 301 NYLEDECDQRKVAILIYYIGQDALVIFYSFNVDIDTISFEELASKFSNHIIPQINVT--- 471
           N+L+     RK  I +Y+ G      F  F +    +S E   S+F N++ PQ N+T   
Sbjct: 468 NFLKHMWSIRKRFIPVYFKGD-----FCPF-IKSTALS-EGTNSRFKNNVGPQYNITNFM 520

Query: 472 MERHKLFNRRQNLEESIDNYVTDLK 546
           +E  ++ +  QNLE+  D++++  K
Sbjct: 521 IEYERVMDTIQNLEQ-FDDHISRTK 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,444,469
Number of Sequences: 37544
Number of extensions: 354592
Number of successful extensions: 733
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)