Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2455
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0874 - 28988687-28989736                                         29   3.2  
01_06_0692 + 31276342-31276479,31277161-31277408,31277541-312777...    29   4.3  
05_07_0264 + 28779934-28781289                                         28   5.6  
02_05_0209 - 26786399-26786449,26786533-26786625,26786721-267868...    28   5.6  
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912...    28   7.5  
05_07_0263 + 28775769-28777109                                         28   7.5  
01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101...    28   7.5  
04_03_0881 + 20528257-20528760,20528837-20529283                       27   9.9  

>04_04_0874 - 28988687-28989736
          Length = 349

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -3

Query: 397 HLDQPRQPDPWAGVLVHHVRALPTPSP-LFQALD-PVGLQFSGIGTQSPGTVCPGTND 230
           +L  P    P A  +VH  R +PTPSP L  +LD P+ +     GT +   + P   D
Sbjct: 283 YLVDPAATQPPAPEIVH-TRLIPTPSPQLGSSLDTPIQVDSETEGTNTESEIKPDITD 339


>01_06_0692 +
           31276342-31276479,31277161-31277408,31277541-31277722,
           31278007-31278143,31278381-31278546,31278615-31278731,
           31279038-31279198,31279431-31279634
          Length = 450

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = -3

Query: 496 RVLPPDRFFHRQHARHC*TKPSQRPFLRYGMILHLDQPRQPDPWAGVLVHHVRALPTPSP 317
           R      FF   H +H    P  RP   YG ++HL   R   P +  +     A P+P P
Sbjct: 46  RTAATSTFFANPHVKHL-PGPFLRPSPHYGALVHLPSFRNKTPISIAMA----ASPSPPP 100

Query: 316 L 314
           L
Sbjct: 101 L 101


>05_07_0264 + 28779934-28781289
          Length = 451

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 549 VTASARGLLFLRPSFRAQPLTFTTATFA 632
           V A+ +  L L PSFRA+PL  T  ++A
Sbjct: 149 VLAALQSFLSLEPSFRARPLYLTGESYA 176


>02_05_0209 -
           26786399-26786449,26786533-26786625,26786721-26786861,
           26786973-26787050,26787146-26787247,26787595-26787693,
           26787804-26787875,26787964-26788104,26788222-26788503
          Length = 352

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +1

Query: 70  FSPYDCSLVLPKMHIEVQVALNFVISYLYNKLPRRRVNI-FGEELEKALKDKFRGHWYPD 246
           +S    ++ + ++ IE +V +N ++  + +  PRRR+N+ FGE+     +D     W   
Sbjct: 38  YSSSGMNVGVSRLKIE-EVLVNGLLDAMKSSSPRRRLNVAFGEDNSSEEEDPAYSAWMAK 96

Query: 247 RPCRGSAFR 273
            P   ++F+
Sbjct: 97  CPSALASFK 105


>12_02_0648 +
           21490202-21490296,21490547-21490634,21491216-21491260,
           21491355-21491387,21491480-21491557,21491647-21491690,
           21491765-21491805,21492102-21492184,21492261-21492352,
           21492468-21492537,21492838-21492876,21493670-21493687,
           21494586-21494713,21495235-21495358,21495585-21495716,
           21496092-21496223,21496582-21496665
          Length = 441

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 424 PFLRYGMILHLDQPRQPDPWAGV 356
           P  RY + L   QPR+P  W G+
Sbjct: 231 PVYRYKICLRFTQPREPAHWEGI 253


>05_07_0263 + 28775769-28777109
          Length = 446

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 549 VTASARGLLFLRPSFRAQPLTFTTATFA 632
           V A+ + L  L PSFRA+PL  T  ++A
Sbjct: 147 VLAALQSLYSLEPSFRARPLYLTGESYA 174


>01_06_1516 -
           37908284-37908497,37909666-37909733,37909809-37910186,
           37910315-37910393,37910433-37910749
          Length = 351

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 307 LERAARESGVPVRDVLEHLPRDLAVWVDPGEVSYRI 414
           L+R A E+ + +RD++E +P  +A W D G   + I
Sbjct: 62  LQRIANET-IELRDLVEIVPEPIAKWQDVGPDHFNI 96


>04_03_0881 + 20528257-20528760,20528837-20529283
          Length = 316

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -2

Query: 185 MLTRRLGSLLYK*DMTKFRATCTSICIFGSTSEQSYGENRWCLPLGDRRLTKPLCQQPR 9
           M  + L  +LYK      RA  T      S+S   +G ++ C P        P C+ PR
Sbjct: 1   MAKKGLVGILYKLRDVHHRAPPTPTSPSSSSSPHCHGRHQLCYPPAPSSWPWPSCRHPR 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,672,319
Number of Sequences: 37544
Number of extensions: 460533
Number of successful extensions: 1313
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)