Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2453
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.0  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 403 NSEHSYFIINKFYMLFNLYAFEQF*INTSWLCL-SNSELPSFKYKIA 540
           NSE  Y +   F +L+N   F+ F    +W  L  NS + +  + IA
Sbjct: 101 NSEQKYEVRMLFELLYNAKDFQTFYKTAAWARLRMNSGMFTTAFSIA 147


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 403 NSEHSYFIINKFYMLFNLYAFEQF*INTSWLCL-SNSELPSFKYKIA 540
           NSE  Y +   F +L+N   F+ F    +W  L  NS + +  + IA
Sbjct: 101 NSEQKYEVRMLFELLYNAKDFQTFYKTAAWARLRMNSGMFTTAFSIA 147


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 616 NKLNQNIYKSRNIIKSISNLIASL 545
           NK N N+YK   I+ ++++  + L
Sbjct: 305 NKFNNNVYKDALIVCTVNSCTSML 328


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 616 NKLNQNIYKSRNIIKSISNLIASL 545
           NK N N+YK   I+ ++++  + L
Sbjct: 358 NKFNNNVYKDALIVCTVNSCTSML 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,030
Number of Sequences: 438
Number of extensions: 3890
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)