Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2452
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 58 9e-10
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 50 3e-07
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 42 1e-04
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 32 0.090
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 30 0.27
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 1.9
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 27 2.6
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 27 3.4
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 26 5.9
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 7.8
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 25 7.8
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 25 7.8
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 58.4 bits (135), Expect = 9e-10
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Frame = +2
Query: 143 EALTEI*FVLSSVDKDRSGYISADELQQALSNGTWNPFNPETVRLMIGMFDKQNRGVISF 322
E + E S D+D+ G I+++EL + + +P E ++ MI D G I F
Sbjct: 9 EQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAE-LQDMINEVDADGNGTIDF 67
Query: 323 EDFGALW-KYVSDWQN------CFRSFDRDNSGNIDRVELKNALTAFGYRLSDDVVGIMV 481
+F + + + D N F+ FD+D +G I EL + LT+ G RLS + V M+
Sbjct: 68 TEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMI 127
Query: 482 QKFDRFGRGTILFDDF 529
++ D G G I +++F
Sbjct: 128 READTDGDGVINYEEF 143
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +2
Query: 350 VSDWQNCFRSFDRDNSGNIDRVELKNALTAFGYRLSDDVVGIMVQKFDRFGRGTILFDDF 529
+++++ F FDRD GNI EL + + G + + M+ + D G GTI F +F
Sbjct: 11 IAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEF 70
Query: 530 I 532
+
Sbjct: 71 L 71
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 50.0 bits (114), Expect = 3e-07
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Frame = +2
Query: 164 FVLSSVDKDRSGYISADELQQALSNGTWNPFNPETVRLMIGMFDK-QNRGVISFEDFGAL 340
FVL +DKD G I + L + N + E +L + D + +SF L
Sbjct: 15 FVLYDIDKD--GLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKFMSFVS-NKL 71
Query: 341 WKYVSDWQ--NCFRSFDRDNSGNIDRVELKNALTAFGYRLSDDVVGIMVQKFDRFGRGTI 514
+ S+ + FR FD+DNSG I+ + + + G +LSD+ V +MVQ+ D G+
Sbjct: 72 RETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSF 131
Query: 515 LFDDFIQ 535
+ DF+Q
Sbjct: 132 DYYDFVQ 138
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +2
Query: 356 DWQNCFRSFDRDNSGNIDRVELKNALTAFGYRLSDDVVGIMVQKFDRFGRGTILFDDFIQ 535
D F+ FD D ID EL+ A+ A G+ V +++ FD+ G+G + +DF++
Sbjct: 38 DINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVR 97
Score = 41.1 bits (92), Expect = 1e-04
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Frame = +2
Query: 182 DKDRSGYISADELQQALSNGTWNPFNPETVRLMIGMFDKQNRGVISFEDFGALW--KYVS 355
D D+ I EL+ A+ +N E ++++ FDK +G + EDF + K V
Sbjct: 47 DSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRD-FDKTGKGYLQMEDFVRVMTEKIVE 105
Query: 356 -----DWQNCFRSFDRDNSGNIDRVELKNALTAFGYRLSDDVVGIMVQKFDRFGRGTILF 520
+ + F FD D +G I L+ + D + M+++FD G I
Sbjct: 106 RDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDGEINE 165
Query: 521 DDFI 532
+FI
Sbjct: 166 QEFI 169
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 31.9 bits (69), Expect = 0.090
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 350 VSDWQNCFRSFDRDNSGNIDRVELKNALTAFGYRLSDDVVGIMVQKFD 493
+ + + F D+D GNI R ++K LT+ S+D + M + +
Sbjct: 47 IQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMFESIN 94
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 164 FVLSSVDKDRSGYISADELQQALSNGTWNPFNPETVRLMIGMFDKQNRGVISFED 328
+V + D D++GYI E ALS + N + + ++D N G+IS+++
Sbjct: 67 YVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLI-WAFQLYDLDNNGLISYDE 120
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = -3
Query: 525 SSNNIVPLPNLSNFCTIIPTTSSDNLYPKAVSAFFNSTLS 406
++ +VP +N + +PTT+ +++P + F+N+T +
Sbjct: 141 NTTTVVPPTTHANTTSFVPTTTESSIHP-ITTGFYNTTFT 179
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 182 DKDRSGYISADELQQALSNGTWNPFNPETVRLMIGMFDKQNRGVISFEDFGALWKYVS 355
D GYI ++L+++ + N E ++LM+ + G +S E+F LW ++S
Sbjct: 22 DVTHKGYIDFEDLRRSCAQLGEN-LTKEQLQLMLDLAG--TNGKVSREEFAELWIHIS 76
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = -3
Query: 534 CMKSSNNIVPLPNLSNFCTIIPTTSSDNLYPKAVSAFFNSTLSIFPELSRSNDRKQFCQS 355
C +S N + ++ TIIP + A + T S+ + ++ D Q C
Sbjct: 246 CSESINTSA-VAKFTDIPTIIPIFLDPSYQSYAAKTIHSDTSSLASSIIQTGDGTQSCDE 304
Query: 354 ETYFQSA 334
TY + A
Sbjct: 305 STYIELA 311
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.8 bits (54), Expect = 5.9
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Frame = -3
Query: 507 PLPNLSNFCTIIPTTSSDNLYPKAV------SAFFNSTLSIFPELSRSNDRKQFCQSETY 346
P NF I T S NLY ++V ++ N T + E+ S D E
Sbjct: 362 PTGKRQNFINITVTDPSKNLYERSVKTAAELASLQNVTETTDNEIPNSPDFLDAASEEDE 421
Query: 345 FQSAPKSSNDMTPLFCLSNIPIIRRTVSGLNGFHVPLDRACCSSS 211
+ SS+ +TPL L N + + F PL + SSS
Sbjct: 422 HIPSLDSSSLLTPL-ALPNKKAFQPVKFRVPSFSSPLVKPASSSS 465
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -2
Query: 541 AALYEIIKQYCPSTESIKFLHHYTNNIIRQSVSKGCKCILQFHSI 407
A Y KQY E+ KFL H N ++ + ++ + + + ++
Sbjct: 174 AQYYRTEKQYDKYLENNKFLTHLNNEVLHDNYTRNIEKLKELDNL 218
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -2
Query: 514 YCPSTESIKFLHHYTNNIIRQSVSKGCKCILQFHSIYIPRII---TVK*SETILPIRNIF 344
Y S++ I+ +H +I Q+ + GC + + IP +I K + I P++N+F
Sbjct: 155 YAQSSQ-IRAIHQKMFQVI-QNQANGCS-MKELVQKLIPEVIGRAIEKATNNIYPLQNVF 211
Query: 343 PKCTKVLK 320
+ K+LK
Sbjct: 212 VRKVKILK 219
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 313 DTPILFVKHTNHQTYSF 263
D PILF+KH N+ T F
Sbjct: 216 DLPILFIKHPNNGTSFF 232
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,354
Number of Sequences: 5004
Number of extensions: 72338
Number of successful extensions: 234
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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