Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2450
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 203 EIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENF 328
           E+P   K   +   ++ I  D    I + + G  VP+  E+F
Sbjct: 157 ELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIESF 198


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 525 MQAKTQMGSQFFHHTC*NTPGLDGRH 602
           ++ +T++   +FHHT      L GRH
Sbjct: 29  LRTRTKLQPTYFHHTYIIYESLCGRH 54


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 525 MQAKTQMGSQFFHHTC*NTPGLDGRH 602
           ++ +T++   +FHHT      L GRH
Sbjct: 29  LRTRTKLQPTYFHHTYIIYESLCGRH 54


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 502 SIVLQLEVFIFKTFTIYTAPSSSITLGKITTLDHEIFNYSVELAPFVPLPL 350
           S+ L LE  + +       P S++ +  +T  D+E   Y   L   + LP+
Sbjct: 73  SLTLDLEYELVENLQANEKPWSTLPIEDLTKSDNEDITYPTVLEVQLNLPI 123


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 502 SIVLQLEVFIFKTFTIYTAPSSSITLGKITTLDHEIFNYSVELAPFVPLPL 350
           S+ L LE  + +       P S++ +  +T  D+E   Y   L   + LP+
Sbjct: 111 SLTLDLEYELVENLQANEKPWSTLPIEDLTKSDNEDITYPTVLEVQLNLPI 161


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 371 SLCTPPPQVSELVER 327
           S  TPPPQV E+ ++
Sbjct: 685 SATTPPPQVDEVDDK 699


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,259
Number of Sequences: 438
Number of extensions: 3641
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)