Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2449
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   6.7  
SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   6.7  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    24   8.8  

>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 308 PHPSNRNALLLHGRNRQGGGTYP 376
           PHP N   +LL G N Q   + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 235 NQKNELLTLYSIGSHKTLRN 176
           NQ NE++ LY    HK + N
Sbjct: 33  NQTNEVIGLYKANEHKFMNN 52


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 6/28 (21%)
 Frame = +3

Query: 252 KVRLPALII------VDSSIVTTAAPTL 317
           K+ +PALI+      +D++IVTTA PT+
Sbjct: 96  KIVVPALILTLFLAALDNTIVTTALPTI 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,706,929
Number of Sequences: 5004
Number of extensions: 31295
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)