Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2447
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    29   1.6  
05_03_0408 + 13601576-13601748,13601795-13602104,13602597-136028...    28   3.7  
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155...    27   6.5  
02_05_0587 + 30162806-30163183,30163315-30163478,30163571-301636...    27   6.5  

>06_01_0926 -
           7139220-7139318,7139394-7139478,7139573-7139643,
           7139996-7140076,7140805-7140895,7141242-7141330,
           7141749-7141802,7141906-7142085,7142175-7142237,
           7142575-7142705,7142807-7142900,7143343-7143684,
           7143957-7144348,7145010-7148487,7149101-7149187,
           7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 108 TSTPPSILRENSNVSFKSSTTSAPLFKPKRITVS 209
           TST P++ +E+S ++ K S TSA   KP   T +
Sbjct: 475 TSTTPTVPQEHSGITEKPSQTSADDVKPSESTAA 508


>05_03_0408 +
           13601576-13601748,13601795-13602104,13602597-13602834,
           13603014-13603364,13603457-13603542,13603685-13603759,
           13604241-13604542,13605359-13605622,13606032-13606806
          Length = 857

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 503 LTIGRIGYRA-PPRAPTKLRAFV*VPSNP 420
           +  G+ GY   PP  PT+ R FV +P +P
Sbjct: 706 VNFGQYGYAGYPPNRPTRCRRFVPLPGSP 734


>05_04_0226 +
           19215091-19215172,19215281-19215394,19215508-19215590,
           19215682-19215820,19215862-19216191,19216414-19216693,
           19216795-19216956,19217134-19217349,19217458-19217495,
           19217597-19217760,19217833-19217946,19218042-19218083,
           19218180-19218983
          Length = 855

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 506 RLTIGRIGYRAPPRAPTKLR 447
           R  +GRIG   PP+AP +LR
Sbjct: 620 RPPLGRIGNHIPPKAPLRLR 639


>02_05_0587 +
           30162806-30163183,30163315-30163478,30163571-30163654,
           30163737-30163794,30164092-30164145,30164244-30164309,
           30164310-30164381,30164547-30164627,30165361-30165533,
           30165916-30166018,30166148-30166279,30166432-30166554,
           30166898-30167002,30167397-30167722,30167919-30168258,
           30169973-30170113,30170589-30170801,30170901-30171119,
           30171272-30171619,30171711-30172043,30172548-30172601
          Length = 1188

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 473 PPRAPTKLRAFV*VPSNPVLRAP 405
           PPR+P +LR  + +PS  ++R+P
Sbjct: 15  PPRSPRRLRQHLALPSGVLIRSP 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,364
Number of Sequences: 37544
Number of extensions: 265963
Number of successful extensions: 515
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)